Strain Fitness in Escherichia coli BW25113 around b2435
Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.1 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,549,388 | + | b2433 | b2433 | 0.20 | -1.7 |
2,549,645 | + | b2433 | b2433 | 0.77 | +0.9 |
2,549,680 | + | b2433 | b2433 | 0.85 | +0.7 |
2,549,680 | + | b2433 | b2433 | 0.85 | -1.3 |
2,549,746 | - | +0.9 | |||
2,549,795 | + | b2434 | b2434 | 0.14 | +2.3 |
2,549,833 | - | b2434 | b2434 | 0.23 | -1.3 |
2,549,864 | + | b2434 | b2434 | 0.30 | +0.3 |
2,550,001 | + | b2434 | b2434 | 0.62 | +2.1 |
2,550,037 | + | b2434 | b2434 | 0.71 | -1.1 |
2,550,357 | + | +1.8 | |||
2,550,357 | + | +1.3 | |||
2,550,381 | + | -1.9 | |||
2,550,597 | - | amiA | b2435 | 0.26 | -1.9 |
2,550,631 | - | amiA | b2435 | 0.30 | -3.1 |
2,550,747 | + | amiA | b2435 | 0.43 | -1.5 |
2,550,779 | + | amiA | b2435 | 0.47 | -0.7 |
2,550,779 | + | amiA | b2435 | 0.47 | -1.3 |
2,551,032 | + | amiA | b2435 | 0.76 | -1.5 |
2,551,066 | - | amiA | b2435 | 0.80 | +0.3 |
2,551,197 | + | +1.3 | |||
2,551,266 | + | +0.9 | |||
2,551,295 | - | +1.3 | |||
2,551,295 | - | +1.3 | |||
2,551,355 | - | hemF | b2436 | 0.12 | -1.3 |
2,551,444 | + | hemF | b2436 | 0.22 | +0.3 |
2,551,444 | + | hemF | b2436 | 0.22 | -0.5 |
2,551,531 | - | hemF | b2436 | 0.32 | +0.8 |
2,551,643 | - | hemF | b2436 | 0.44 | -1.1 |
2,551,645 | + | hemF | b2436 | 0.44 | -1.0 |
2,551,678 | + | hemF | b2436 | 0.48 | -2.6 |
2,551,678 | + | hemF | b2436 | 0.48 | -0.1 |
2,551,837 | + | hemF | b2436 | 0.66 | -1.5 |
2,551,837 | + | hemF | b2436 | 0.66 | -0.1 |
2,552,065 | - | +1.0 | |||
2,552,065 | - | +0.3 | |||
2,552,087 | + | +0.0 | |||
2,552,087 | + | +0.0 | |||
2,552,141 | + | +0.8 |
Or see this region's nucleotide sequence