Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt baeS and baeR overlap by 4 nucleotides baeR and b2080 are separated by 190 nucleotides b2080 and yegQ are separated by 146 nucleotides
b2078: baeS - sensory histidine kinase in two-component regulatory system with BaeR (NCBI), at 2,160,900 to 2,162,303
baeS
b2079: baeR - DNA-binding response regulator in two-component regulatory system with BaeS (NCBI), at 2,162,300 to 2,163,022
baeR
b2080: b2080 - orf, hypothetical protein (VIMSS), at 2,163,213 to 2,163,545
b2080
b2081: yegQ - predicted peptidase (NCBI), at 2,163,692 to 2,165,053
yegQ
Position (kb)
2163
2164 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2162.219 kb on + strand at 2162.259 kb on + strand at 2162.379 kb on + strand, within baeR at 2162.448 kb on - strand, within baeR at 2162.491 kb on + strand, within baeR at 2162.510 kb on + strand, within baeR at 2162.648 kb on + strand, within baeR at 2162.817 kb on + strand, within baeR at 2162.817 kb on + strand, within baeR at 2162.863 kb on + strand, within baeR at 2162.997 kb on - strand at 2163.076 kb on + strand at 2163.084 kb on - strand at 2163.084 kb on - strand at 2163.217 kb on - strand at 2163.246 kb on + strand at 2163.350 kb on + strand, within b2080 at 2163.536 kb on - strand at 2163.571 kb on - strand at 2163.571 kb on - strand at 2163.599 kb on - strand at 2163.599 kb on - strand at 2163.635 kb on + strand at 2163.725 kb on + strand at 2163.733 kb on + strand at 2163.765 kb on + strand at 2163.851 kb on - strand, within yegQ at 2163.901 kb on + strand, within yegQ at 2163.902 kb on + strand, within yegQ at 2164.134 kb on + strand, within yegQ at 2164.277 kb on - strand, within yegQ at 2164.277 kb on - strand, within yegQ at 2164.449 kb on - strand, within yegQ at 2164.538 kb on - strand, within yegQ
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml remove 2,162,219 + -0.1 2,162,259 + +0.4 2,162,379 + baeR b2079 0.11 +1.2 2,162,448 - baeR b2079 0.20 +0.8 2,162,491 + baeR b2079 0.26 +0.2 2,162,510 + baeR b2079 0.29 +0.2 2,162,648 + baeR b2079 0.48 -1.5 2,162,817 + baeR b2079 0.72 +1.9 2,162,817 + baeR b2079 0.72 -2.4 2,162,863 + baeR b2079 0.78 -0.1 2,162,997 - -0.4 2,163,076 + +0.3 2,163,084 - -0.9 2,163,084 - +0.0 2,163,217 - -0.1 2,163,246 + -0.6 2,163,350 + b2080 b2080 0.41 -1.8 2,163,536 - +0.1 2,163,571 - -1.8 2,163,571 - +3.9 2,163,599 - -2.5 2,163,599 - +3.1 2,163,635 + +0.2 2,163,725 + -1.1 2,163,733 + -1.0 2,163,765 + +0.0 2,163,851 - yegQ b2081 0.12 -0.8 2,163,901 + yegQ b2081 0.15 +0.1 2,163,902 + yegQ b2081 0.15 -0.3 2,164,134 + yegQ b2081 0.32 -0.8 2,164,277 - yegQ b2081 0.43 +1.6 2,164,277 - yegQ b2081 0.43 -1.3 2,164,449 - yegQ b2081 0.56 -0.4 2,164,538 - yegQ b2081 0.62 -0.2
Or see this region's nucleotide sequence