Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdtB and mdtC are separated by 0 nucleotides mdtC and mdtD are separated by 0 nucleotides
b2075: mdtB - multidrug efflux system, subunit B (NCBI), at 2,153,287 to 2,156,409
mdtB
b2076: mdtC - multidrug efflux system, subunit C (NCBI), at 2,156,410 to 2,159,487
mdtC
b2077: mdtD - multidrug efflux system protein (NCBI), at 2,159,488 to 2,160,903
mdtD
Position (kb)
2156
2157
2158
2159
2160 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2155.480 kb on - strand, within mdtB at 2155.514 kb on - strand, within mdtB at 2155.543 kb on + strand, within mdtB at 2155.550 kb on - strand, within mdtB at 2155.566 kb on - strand, within mdtB at 2155.594 kb on - strand, within mdtB at 2155.630 kb on - strand, within mdtB at 2155.630 kb on - strand, within mdtB at 2155.761 kb on - strand, within mdtB at 2155.885 kb on + strand, within mdtB at 2155.919 kb on + strand, within mdtB at 2156.112 kb on - strand at 2156.167 kb on + strand at 2156.248 kb on - strand at 2156.265 kb on - strand at 2156.330 kb on - strand at 2156.357 kb on + strand at 2156.478 kb on + strand at 2156.511 kb on - strand at 2156.564 kb on + strand at 2156.564 kb on + strand at 2156.991 kb on + strand, within mdtC at 2157.092 kb on - strand, within mdtC at 2157.092 kb on - strand, within mdtC at 2157.158 kb on - strand, within mdtC at 2157.214 kb on - strand, within mdtC at 2157.272 kb on - strand, within mdtC at 2157.330 kb on + strand, within mdtC at 2157.378 kb on + strand, within mdtC at 2157.669 kb on + strand, within mdtC at 2157.669 kb on + strand, within mdtC at 2157.725 kb on - strand, within mdtC at 2157.733 kb on - strand, within mdtC at 2157.925 kb on - strand, within mdtC at 2158.008 kb on + strand, within mdtC at 2158.046 kb on - strand, within mdtC at 2158.079 kb on - strand, within mdtC at 2158.097 kb on + strand, within mdtC at 2158.193 kb on - strand, within mdtC at 2158.544 kb on + strand, within mdtC at 2158.544 kb on + strand, within mdtC at 2158.644 kb on + strand, within mdtC at 2158.644 kb on + strand, within mdtC at 2158.644 kb on + strand, within mdtC at 2158.651 kb on + strand, within mdtC at 2158.651 kb on + strand, within mdtC at 2158.859 kb on + strand, within mdtC at 2158.909 kb on - strand, within mdtC at 2159.001 kb on - strand, within mdtC at 2159.051 kb on + strand, within mdtC at 2159.051 kb on + strand, within mdtC at 2159.064 kb on - strand, within mdtC at 2159.313 kb on + strand at 2159.313 kb on + strand at 2159.346 kb on - strand at 2159.400 kb on + strand at 2159.401 kb on + strand at 2159.401 kb on + strand at 2159.403 kb on + strand at 2159.579 kb on - strand at 2159.579 kb on - strand at 2159.729 kb on + strand, within mdtD at 2159.729 kb on + strand, within mdtD at 2159.897 kb on - strand, within mdtD at 2159.898 kb on - strand, within mdtD at 2159.936 kb on + strand, within mdtD at 2159.962 kb on + strand, within mdtD at 2159.962 kb on + strand, within mdtD at 2160.017 kb on - strand, within mdtD at 2160.017 kb on - strand, within mdtD at 2160.033 kb on + strand, within mdtD at 2160.033 kb on + strand, within mdtD at 2160.063 kb on - strand, within mdtD at 2160.246 kb on - strand, within mdtD at 2160.288 kb on + strand, within mdtD at 2160.292 kb on - strand, within mdtD at 2160.292 kb on - strand, within mdtD at 2160.292 kb on - strand, within mdtD at 2160.315 kb on - strand, within mdtD at 2160.315 kb on - strand, within mdtD at 2160.487 kb on + strand, within mdtD
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml remove 2,155,480 - mdtB b2075 0.70 -0.6 2,155,514 - mdtB b2075 0.71 -0.1 2,155,543 + mdtB b2075 0.72 -1.5 2,155,550 - mdtB b2075 0.72 +0.7 2,155,566 - mdtB b2075 0.73 +1.0 2,155,594 - mdtB b2075 0.74 +1.0 2,155,630 - mdtB b2075 0.75 +2.1 2,155,630 - mdtB b2075 0.75 +0.2 2,155,761 - mdtB b2075 0.79 +0.5 2,155,885 + mdtB b2075 0.83 -0.6 2,155,919 + mdtB b2075 0.84 -1.6 2,156,112 - +0.7 2,156,167 + -0.2 2,156,248 - +0.5 2,156,265 - -0.3 2,156,330 - +1.2 2,156,357 + -0.5 2,156,478 + -2.1 2,156,511 - +1.6 2,156,564 + +0.6 2,156,564 + -2.0 2,156,991 + mdtC b2076 0.19 -2.6 2,157,092 - mdtC b2076 0.22 -0.4 2,157,092 - mdtC b2076 0.22 +2.8 2,157,158 - mdtC b2076 0.24 +2.1 2,157,214 - mdtC b2076 0.26 +0.6 2,157,272 - mdtC b2076 0.28 +2.4 2,157,330 + mdtC b2076 0.30 -0.4 2,157,378 + mdtC b2076 0.31 -0.4 2,157,669 + mdtC b2076 0.41 +1.6 2,157,669 + mdtC b2076 0.41 +0.5 2,157,725 - mdtC b2076 0.43 +0.7 2,157,733 - mdtC b2076 0.43 +0.5 2,157,925 - mdtC b2076 0.49 +0.3 2,158,008 + mdtC b2076 0.52 +1.4 2,158,046 - mdtC b2076 0.53 -0.4 2,158,079 - mdtC b2076 0.54 +1.1 2,158,097 + mdtC b2076 0.55 +1.7 2,158,193 - mdtC b2076 0.58 +0.2 2,158,544 + mdtC b2076 0.69 -1.6 2,158,544 + mdtC b2076 0.69 +1.0 2,158,644 + mdtC b2076 0.73 +1.0 2,158,644 + mdtC b2076 0.73 -2.3 2,158,644 + mdtC b2076 0.73 +1.2 2,158,651 + mdtC b2076 0.73 +2.4 2,158,651 + mdtC b2076 0.73 +2.2 2,158,859 + mdtC b2076 0.80 +3.0 2,158,909 - mdtC b2076 0.81 +0.2 2,159,001 - mdtC b2076 0.84 +3.0 2,159,051 + mdtC b2076 0.86 -1.0 2,159,051 + mdtC b2076 0.86 +2.1 2,159,064 - mdtC b2076 0.86 +0.7 2,159,313 + +2.2 2,159,313 + -1.1 2,159,346 - -1.6 2,159,400 + -1.4 2,159,401 + -0.3 2,159,401 + -0.3 2,159,403 + +1.1 2,159,579 - +1.1 2,159,579 - -0.4 2,159,729 + mdtD b2077 0.17 -1.0 2,159,729 + mdtD b2077 0.17 +0.2 2,159,897 - mdtD b2077 0.29 -0.4 2,159,898 - mdtD b2077 0.29 -0.0 2,159,936 + mdtD b2077 0.32 -0.5 2,159,962 + mdtD b2077 0.33 +0.2 2,159,962 + mdtD b2077 0.33 +0.8 2,160,017 - mdtD b2077 0.37 +0.2 2,160,017 - mdtD b2077 0.37 -1.6 2,160,033 + mdtD b2077 0.38 +0.9 2,160,033 + mdtD b2077 0.38 +1.8 2,160,063 - mdtD b2077 0.41 +2.1 2,160,246 - mdtD b2077 0.54 -0.1 2,160,288 + mdtD b2077 0.56 -0.1 2,160,292 - mdtD b2077 0.57 +1.7 2,160,292 - mdtD b2077 0.57 -1.8 2,160,292 - mdtD b2077 0.57 -2.3 2,160,315 - mdtD b2077 0.58 +1.9 2,160,315 - mdtD b2077 0.58 -1.6 2,160,487 + mdtD b2077 0.71 -0.5
Or see this region's nucleotide sequence