Strain Fitness in Escherichia coli BW25113 around b2070

Experiment: Cisplatin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyegD and yegI are separated by 12 nucleotidesyegI and yegJ are separated by 199 nucleotidesyegJ and yegK are separated by 64 nucleotides b2069: yegD - putative heat shock protein (VIMSS), at 2,145,698 to 2,147,050 yegD b2070: yegI - hypothetical protein (NCBI), at 2,147,063 to 2,149,009 yegI b2071: yegJ - hypothetical protein (NCBI), at 2,149,209 to 2,149,670 yegJ b2072: yegK - hypothetical protein (NCBI), at 2,149,735 to 2,150,496 yegK Position (kb) 2147 2148 2149 2150Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2146.210 kb on + strand, within yegDat 2146.262 kb on + strand, within yegDat 2146.348 kb on - strand, within yegDat 2146.351 kb on + strand, within yegDat 2146.351 kb on + strand, within yegDat 2146.359 kb on - strand, within yegDat 2146.361 kb on - strand, within yegDat 2146.361 kb on - strand, within yegDat 2146.368 kb on + strand, within yegDat 2146.368 kb on + strand, within yegDat 2146.538 kb on - strand, within yegDat 2146.565 kb on + strand, within yegDat 2146.583 kb on - strand, within yegDat 2146.615 kb on - strand, within yegDat 2146.661 kb on - strand, within yegDat 2146.716 kb on + strand, within yegDat 2146.724 kb on - strand, within yegDat 2146.724 kb on - strand, within yegDat 2146.724 kb on - strand, within yegDat 2146.724 kb on - strand, within yegDat 2146.749 kb on - strand, within yegDat 2146.749 kb on - strand, within yegDat 2146.902 kb on + strand, within yegDat 2147.147 kb on - strandat 2147.151 kb on + strandat 2147.181 kb on - strandat 2147.334 kb on - strand, within yegIat 2147.667 kb on + strand, within yegIat 2147.724 kb on + strand, within yegIat 2147.822 kb on - strand, within yegIat 2147.848 kb on + strand, within yegIat 2147.848 kb on + strand, within yegIat 2147.922 kb on - strand, within yegIat 2148.170 kb on - strand, within yegIat 2148.220 kb on + strand, within yegIat 2148.225 kb on - strand, within yegIat 2148.260 kb on + strand, within yegIat 2148.339 kb on + strand, within yegIat 2148.339 kb on + strand, within yegIat 2148.360 kb on + strand, within yegIat 2148.455 kb on - strand, within yegIat 2148.493 kb on - strand, within yegIat 2148.493 kb on - strand, within yegIat 2148.543 kb on - strand, within yegIat 2148.567 kb on - strand, within yegIat 2148.582 kb on - strand, within yegIat 2148.591 kb on + strand, within yegIat 2148.618 kb on - strand, within yegIat 2148.766 kb on + strand, within yegIat 2148.774 kb on + strand, within yegIat 2148.777 kb on - strand, within yegIat 2148.782 kb on + strand, within yegIat 2148.782 kb on + strand, within yegIat 2148.854 kb on - strandat 2148.932 kb on + strandat 2148.934 kb on + strandat 2148.934 kb on + strandat 2148.939 kb on + strandat 2148.949 kb on + strandat 2148.949 kb on + strandat 2148.955 kb on + strandat 2148.956 kb on + strandat 2148.956 kb on + strandat 2148.956 kb on + strandat 2148.973 kb on + strandat 2149.410 kb on + strand, within yegJat 2149.433 kb on + strand, within yegJat 2149.438 kb on + strand, within yegJat 2149.575 kb on - strand, within yegJat 2149.632 kb on - strandat 2149.660 kb on - strandat 2149.660 kb on - strandat 2149.757 kb on - strandat 2149.757 kb on - strandat 2149.776 kb on - strandat 2149.776 kb on - strandat 2149.901 kb on + strand, within yegKat 2149.909 kb on - strand, within yegKat 2149.909 kb on - strand, within yegKat 2149.973 kb on + strand, within yegKat 2149.981 kb on - strand, within yegK

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml
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2,146,210 + yegD b2069 0.38 +1.6
2,146,262 + yegD b2069 0.42 +1.2
2,146,348 - yegD b2069 0.48 +0.2
2,146,351 + yegD b2069 0.48 -0.8
2,146,351 + yegD b2069 0.48 -0.4
2,146,359 - yegD b2069 0.49 -0.4
2,146,361 - yegD b2069 0.49 +1.4
2,146,361 - yegD b2069 0.49 +1.4
2,146,368 + yegD b2069 0.50 -0.4
2,146,368 + yegD b2069 0.50 -0.8
2,146,538 - yegD b2069 0.62 -1.4
2,146,565 + yegD b2069 0.64 +1.2
2,146,583 - yegD b2069 0.65 -0.5
2,146,615 - yegD b2069 0.68 +0.2
2,146,661 - yegD b2069 0.71 +0.9
2,146,716 + yegD b2069 0.75 +1.3
2,146,724 - yegD b2069 0.76 -0.4
2,146,724 - yegD b2069 0.76 +1.2
2,146,724 - yegD b2069 0.76 +3.0
2,146,724 - yegD b2069 0.76 -0.8
2,146,749 - yegD b2069 0.78 +0.2
2,146,749 - yegD b2069 0.78 +0.2
2,146,902 + yegD b2069 0.89 -1.0
2,147,147 - +1.8
2,147,151 + +1.7
2,147,181 - +0.7
2,147,334 - yegI b2070 0.14 -0.7
2,147,667 + yegI b2070 0.31 -0.1
2,147,724 + yegI b2070 0.34 -0.3
2,147,822 - yegI b2070 0.39 -1.6
2,147,848 + yegI b2070 0.40 -1.1
2,147,848 + yegI b2070 0.40 -1.6
2,147,922 - yegI b2070 0.44 +0.5
2,148,170 - yegI b2070 0.57 +2.3
2,148,220 + yegI b2070 0.59 +1.4
2,148,225 - yegI b2070 0.60 +0.3
2,148,260 + yegI b2070 0.61 +0.9
2,148,339 + yegI b2070 0.66 +0.8
2,148,339 + yegI b2070 0.66 +2.2
2,148,360 + yegI b2070 0.67 -1.1
2,148,455 - yegI b2070 0.71 -0.6
2,148,493 - yegI b2070 0.73 +1.2
2,148,493 - yegI b2070 0.73 -1.5
2,148,543 - yegI b2070 0.76 -0.5
2,148,567 - yegI b2070 0.77 -1.4
2,148,582 - yegI b2070 0.78 +0.2
2,148,591 + yegI b2070 0.78 -0.3
2,148,618 - yegI b2070 0.80 +0.5
2,148,766 + yegI b2070 0.87 -0.4
2,148,774 + yegI b2070 0.88 -1.1
2,148,777 - yegI b2070 0.88 -2.0
2,148,782 + yegI b2070 0.88 -0.4
2,148,782 + yegI b2070 0.88 -0.4
2,148,854 - +1.6
2,148,932 + -0.4
2,148,934 + +0.2
2,148,934 + -0.5
2,148,939 + -2.0
2,148,949 + -2.1
2,148,949 + +1.9
2,148,955 + -0.8
2,148,956 + +2.1
2,148,956 + +3.9
2,148,956 + +2.5
2,148,973 + +0.9
2,149,410 + yegJ b2071 0.44 -2.0
2,149,433 + yegJ b2071 0.48 +1.9
2,149,438 + yegJ b2071 0.50 -2.4
2,149,575 - yegJ b2071 0.79 +1.2
2,149,632 - -2.1
2,149,660 - +0.6
2,149,660 - +1.6
2,149,757 - +1.5
2,149,757 - +3.3
2,149,776 - +1.2
2,149,776 - -2.0
2,149,901 + yegK b2072 0.22 -0.5
2,149,909 - yegK b2072 0.23 +0.8
2,149,909 - yegK b2072 0.23 +0.5
2,149,973 + yegK b2072 0.31 -1.7
2,149,981 - yegK b2072 0.32 -0.3

Or see this region's nucleotide sequence