Strain Fitness in Escherichia coli BW25113 around b1884
Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.1 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,965,696 | - | cheB | b1883 | 0.21 | -1.1 |
1,965,815 | - | cheB | b1883 | 0.32 | +2.0 |
1,966,252 | + | cheB | b1883 | 0.74 | -1.8 |
1,966,273 | + | cheB | b1883 | 0.76 | -0.3 |
1,966,356 | - | cheB | b1883 | 0.84 | +0.2 |
1,966,514 | + | -0.6 | |||
1,966,553 | - | -1.1 | |||
1,966,628 | + | cheR | b1884 | 0.12 | +0.2 |
1,966,628 | + | cheR | b1884 | 0.12 | -1.3 |
1,966,690 | - | cheR | b1884 | 0.19 | +0.2 |
1,966,733 | + | cheR | b1884 | 0.24 | -0.8 |
1,966,883 | - | cheR | b1884 | 0.41 | +0.5 |
1,966,883 | - | cheR | b1884 | 0.41 | -1.6 |
1,966,890 | - | cheR | b1884 | 0.42 | -1.5 |
1,967,084 | - | cheR | b1884 | 0.65 | -1.3 |
1,967,202 | + | cheR | b1884 | 0.78 | +0.3 |
1,967,413 | - | +1.2 | |||
1,967,413 | - | -0.3 | |||
1,967,576 | - | tap | b1885 | 0.11 | +0.1 |
1,967,731 | + | tap | b1885 | 0.20 | -1.0 |
1,967,997 | - | tap | b1885 | 0.37 | -0.8 |
1,968,203 | + | tap | b1885 | 0.50 | -0.3 |
1,968,218 | + | tap | b1885 | 0.51 | +0.5 |
1,968,238 | - | tap | b1885 | 0.52 | +1.9 |
1,968,316 | + | tap | b1885 | 0.57 | -0.1 |
1,968,329 | - | tap | b1885 | 0.58 | +1.2 |
Or see this region's nucleotide sequence