Strain Fitness in Escherichia coli BW25113 around b1805
Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.1 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,885,099 | - | rnd | b1804 | 0.19 | -1.6 |
1,885,229 | + | rnd | b1804 | 0.30 | +2.2 |
1,885,229 | + | rnd | b1804 | 0.30 | +1.2 |
1,885,234 | + | rnd | b1804 | 0.31 | -0.8 |
1,885,369 | - | rnd | b1804 | 0.43 | +0.6 |
1,885,369 | - | rnd | b1804 | 0.43 | +2.8 |
1,885,413 | - | rnd | b1804 | 0.47 | +3.7 |
1,885,590 | - | rnd | b1804 | 0.62 | +2.1 |
1,885,602 | + | rnd | b1804 | 0.63 | +0.2 |
1,885,644 | + | rnd | b1804 | 0.67 | +0.5 |
1,885,644 | + | rnd | b1804 | 0.67 | +1.9 |
1,885,714 | + | rnd | b1804 | 0.73 | +2.7 |
1,885,830 | + | rnd | b1804 | 0.84 | +0.5 |
1,886,442 | + | fadD | b1805 | 0.21 | -0.8 |
1,886,442 | + | fadD | b1805 | 0.21 | +0.9 |
1,886,528 | - | fadD | b1805 | 0.26 | +1.2 |
1,886,528 | - | fadD | b1805 | 0.26 | +1.6 |
1,886,531 | - | fadD | b1805 | 0.26 | -0.5 |
1,886,558 | - | fadD | b1805 | 0.28 | -0.5 |
1,886,671 | - | fadD | b1805 | 0.35 | +0.7 |
1,886,704 | - | fadD | b1805 | 0.37 | +1.3 |
1,886,704 | - | fadD | b1805 | 0.37 | +1.3 |
1,886,718 | - | fadD | b1805 | 0.38 | +2.6 |
1,886,718 | - | fadD | b1805 | 0.38 | +0.6 |
1,886,718 | - | fadD | b1805 | 0.38 | -2.3 |
1,886,754 | + | fadD | b1805 | 0.40 | +1.0 |
1,886,976 | - | fadD | b1805 | 0.53 | -1.6 |
1,886,976 | - | fadD | b1805 | 0.53 | +1.9 |
1,887,085 | + | fadD | b1805 | 0.59 | +1.7 |
1,887,087 | - | fadD | b1805 | 0.59 | +2.3 |
1,887,098 | - | fadD | b1805 | 0.60 | +1.2 |
1,887,130 | + | fadD | b1805 | 0.62 | -2.1 |
1,887,130 | + | fadD | b1805 | 0.62 | -1.5 |
1,887,187 | - | fadD | b1805 | 0.65 | +0.2 |
1,887,187 | - | fadD | b1805 | 0.65 | +0.8 |
1,887,261 | + | fadD | b1805 | 0.70 | +1.2 |
1,887,261 | + | fadD | b1805 | 0.70 | -0.7 |
1,887,321 | + | fadD | b1805 | 0.73 | +2.0 |
1,887,381 | + | fadD | b1805 | 0.77 | -0.6 |
1,887,381 | + | fadD | b1805 | 0.77 | +0.9 |
1,887,445 | + | fadD | b1805 | 0.81 | -1.5 |
1,887,453 | - | fadD | b1805 | 0.81 | +2.2 |
1,887,453 | - | fadD | b1805 | 0.81 | -2.0 |
1,887,455 | + | fadD | b1805 | 0.81 | +1.2 |
1,887,455 | + | fadD | b1805 | 0.81 | -1.1 |
1,887,461 | + | fadD | b1805 | 0.82 | +0.2 |
1,887,762 | - | +0.7 | |||
1,887,981 | + | -1.5 | |||
1,888,207 | + | yeaY | b1806 | 0.40 | +0.2 |
1,888,428 | - | yeaY | b1806 | 0.78 | -0.8 |
1,888,428 | - | yeaY | b1806 | 0.78 | -2.0 |
1,888,463 | + | yeaY | b1806 | 0.84 | +0.4 |
1,888,586 | + | +2.0 | |||
1,888,586 | + | +0.2 |
Or see this region's nucleotide sequence