Strain Fitness in Escherichia coli BW25113 around b1804

Experiment: Cisplatin 0.1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyeaX and rnd are separated by 53 nucleotidesrnd and fadD are separated by 69 nucleotides b1803: yeaX - predicted oxidoreductase (NCBI), at 1,883,869 to 1,884,834 yeaX b1804: rnd - ribonuclease D (NCBI), at 1,884,888 to 1,886,015 rnd b1805: fadD - acyl-CoA synthase (NCBI), at 1,886,085 to 1,887,770 fadD Position (kb) 1884 1885 1886 1887Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1884.004 kb on - strand, within yeaXat 1884.124 kb on - strand, within yeaXat 1884.124 kb on - strand, within yeaXat 1884.238 kb on - strand, within yeaXat 1884.238 kb on - strand, within yeaXat 1884.518 kb on + strand, within yeaXat 1884.518 kb on + strand, within yeaXat 1884.707 kb on + strand, within yeaXat 1885.050 kb on + strand, within rndat 1885.099 kb on - strand, within rndat 1885.229 kb on + strand, within rndat 1885.229 kb on + strand, within rndat 1885.234 kb on + strand, within rndat 1885.369 kb on - strand, within rndat 1885.369 kb on - strand, within rndat 1885.413 kb on - strand, within rndat 1885.590 kb on - strand, within rndat 1885.602 kb on + strand, within rndat 1885.644 kb on + strand, within rndat 1885.644 kb on + strand, within rndat 1885.714 kb on + strand, within rndat 1885.830 kb on + strand, within rndat 1886.442 kb on + strand, within fadDat 1886.442 kb on + strand, within fadDat 1886.528 kb on - strand, within fadDat 1886.528 kb on - strand, within fadDat 1886.531 kb on - strand, within fadDat 1886.558 kb on - strand, within fadDat 1886.671 kb on - strand, within fadDat 1886.704 kb on - strand, within fadDat 1886.704 kb on - strand, within fadDat 1886.718 kb on - strand, within fadDat 1886.718 kb on - strand, within fadDat 1886.718 kb on - strand, within fadDat 1886.754 kb on + strand, within fadDat 1886.976 kb on - strand, within fadDat 1886.976 kb on - strand, within fadD

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml
remove
1,884,004 - yeaX b1803 0.14 +0.5
1,884,124 - yeaX b1803 0.26 +0.6
1,884,124 - yeaX b1803 0.26 +0.2
1,884,238 - yeaX b1803 0.38 +0.5
1,884,238 - yeaX b1803 0.38 -1.8
1,884,518 + yeaX b1803 0.67 -1.1
1,884,518 + yeaX b1803 0.67 -0.5
1,884,707 + yeaX b1803 0.87 +1.7
1,885,050 + rnd b1804 0.14 +0.6
1,885,099 - rnd b1804 0.19 -1.6
1,885,229 + rnd b1804 0.30 +2.2
1,885,229 + rnd b1804 0.30 +1.2
1,885,234 + rnd b1804 0.31 -0.8
1,885,369 - rnd b1804 0.43 +0.6
1,885,369 - rnd b1804 0.43 +2.8
1,885,413 - rnd b1804 0.47 +3.7
1,885,590 - rnd b1804 0.62 +2.1
1,885,602 + rnd b1804 0.63 +0.2
1,885,644 + rnd b1804 0.67 +0.5
1,885,644 + rnd b1804 0.67 +1.9
1,885,714 + rnd b1804 0.73 +2.7
1,885,830 + rnd b1804 0.84 +0.5
1,886,442 + fadD b1805 0.21 -0.8
1,886,442 + fadD b1805 0.21 +0.9
1,886,528 - fadD b1805 0.26 +1.2
1,886,528 - fadD b1805 0.26 +1.6
1,886,531 - fadD b1805 0.26 -0.5
1,886,558 - fadD b1805 0.28 -0.5
1,886,671 - fadD b1805 0.35 +0.7
1,886,704 - fadD b1805 0.37 +1.3
1,886,704 - fadD b1805 0.37 +1.3
1,886,718 - fadD b1805 0.38 +2.6
1,886,718 - fadD b1805 0.38 +0.6
1,886,718 - fadD b1805 0.38 -2.3
1,886,754 + fadD b1805 0.40 +1.0
1,886,976 - fadD b1805 0.53 -1.6
1,886,976 - fadD b1805 0.53 +1.9

Or see this region's nucleotide sequence