Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ynjC and ynjD overlap by 1 nucleotides ynjD and b1757 are separated by 66 nucleotides b1757 and b1758 are separated by 8 nucleotides b1758 and nudG are separated by 86 nucleotides
b1755: ynjC - fused transporter subunits of ABC superfamily: membrane components (RefSeq), at 1,835,236 to 1,836,771
ynjC
b1756: ynjD - predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI), at 1,836,771 to 1,837,424
ynjD
b1757: b1757 - putative thiosulfate sulfur transferase (VIMSS), at 1,837,491 to 1,838,798
b1757
b1758: b1758 - putative cytochrome oxidase (VIMSS), at 1,838,807 to 1,839,427
b1758
b1759: nudG - pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase (NCBI), at 1,839,514 to 1,839,921
nudG
Position (kb)
1837
1838
1839 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1836.584 kb on - strand, within ynjC at 1836.773 kb on - strand at 1836.840 kb on - strand, within ynjD at 1837.048 kb on - strand, within ynjD at 1837.083 kb on + strand, within ynjD at 1837.152 kb on + strand, within ynjD at 1837.203 kb on - strand, within ynjD at 1837.203 kb on - strand, within ynjD at 1837.248 kb on + strand, within ynjD at 1837.272 kb on - strand, within ynjD at 1837.793 kb on + strand, within b1757 at 1837.793 kb on + strand, within b1757 at 1838.008 kb on - strand, within b1757 at 1838.022 kb on + strand, within b1757 at 1838.065 kb on - strand, within b1757 at 1838.179 kb on + strand, within b1757 at 1838.194 kb on - strand, within b1757 at 1838.463 kb on + strand, within b1757 at 1838.563 kb on + strand, within b1757 at 1838.833 kb on + strand at 1838.833 kb on + strand at 1839.201 kb on + strand, within b1758 at 1839.552 kb on - strand at 1839.552 kb on - strand at 1839.760 kb on - strand, within nudG
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml remove 1,836,584 - ynjC b1755 0.88 +2.4 1,836,773 - -1.8 1,836,840 - ynjD b1756 0.11 -2.9 1,837,048 - ynjD b1756 0.42 +1.1 1,837,083 + ynjD b1756 0.48 +1.8 1,837,152 + ynjD b1756 0.58 -0.5 1,837,203 - ynjD b1756 0.66 +2.2 1,837,203 - ynjD b1756 0.66 -0.4 1,837,248 + ynjD b1756 0.73 -0.6 1,837,272 - ynjD b1756 0.77 -1.4 1,837,793 + b1757 b1757 0.23 -0.8 1,837,793 + b1757 b1757 0.23 +0.2 1,838,008 - b1757 b1757 0.40 +0.0 1,838,022 + b1757 b1757 0.41 -0.4 1,838,065 - b1757 b1757 0.44 -1.4 1,838,179 + b1757 b1757 0.53 +3.5 1,838,194 - b1757 b1757 0.54 +0.6 1,838,463 + b1757 b1757 0.74 +0.2 1,838,563 + b1757 b1757 0.82 -2.2 1,838,833 + +0.2 1,838,833 + +2.7 1,839,201 + b1758 b1758 0.63 +1.2 1,839,552 - +2.0 1,839,552 - -0.1 1,839,760 - nudG b1759 0.60 +0.2
Or see this region's nucleotide sequence