Strain Fitness in Escherichia coli BW25113 around b1751

Experiment: Cisplatin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntxthA and ydjX are separated by 166 nucleotidesydjX and ydjY are separated by 4 nucleotidesydjY and ydjZ are separated by 14 nucleotidesydjZ and ynjA overlap by 1 nucleotides b1749: xthA - exonuclease III (NCBI), at 1,830,452 to 1,831,258 xthA b1750: ydjX - orf, hypothetical protein (VIMSS), at 1,831,425 to 1,832,135 ydjX b1751: ydjY - orf, hypothetical protein (VIMSS), at 1,832,140 to 1,832,817 ydjY b1752: ydjZ - conserved inner membrane protein (NCBI), at 1,832,832 to 1,833,539 ydjZ b1753: ynjA - hypothetical protein (NCBI), at 1,833,539 to 1,834,087 ynjA Position (kb) 1832 1833Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1831.243 kb on - strandat 1831.243 kb on - strandat 1831.277 kb on - strandat 1831.277 kb on - strandat 1831.351 kb on + strandat 1831.351 kb on + strandat 1831.504 kb on - strand, within ydjXat 1831.535 kb on - strand, within ydjXat 1831.535 kb on - strand, within ydjXat 1831.539 kb on - strand, within ydjXat 1831.642 kb on + strand, within ydjXat 1831.658 kb on + strand, within ydjXat 1831.679 kb on - strand, within ydjXat 1831.737 kb on - strand, within ydjXat 1831.737 kb on - strand, within ydjXat 1831.766 kb on + strand, within ydjXat 1831.766 kb on + strand, within ydjXat 1831.775 kb on + strand, within ydjXat 1831.782 kb on + strand, within ydjXat 1831.827 kb on - strand, within ydjXat 1831.834 kb on + strand, within ydjXat 1831.992 kb on - strand, within ydjXat 1832.016 kb on + strand, within ydjXat 1832.016 kb on + strand, within ydjXat 1832.084 kb on - strandat 1832.113 kb on - strandat 1832.113 kb on - strandat 1832.187 kb on + strandat 1832.403 kb on + strand, within ydjYat 1832.456 kb on + strand, within ydjYat 1832.456 kb on + strand, within ydjYat 1832.456 kb on + strand, within ydjYat 1832.456 kb on + strand, within ydjYat 1832.475 kb on - strand, within ydjYat 1832.475 kb on - strand, within ydjYat 1832.682 kb on + strand, within ydjYat 1832.707 kb on - strand, within ydjYat 1833.245 kb on + strand, within ydjZat 1833.394 kb on - strand, within ydjZat 1833.430 kb on - strand, within ydjZat 1833.789 kb on + strand, within ynjAat 1833.789 kb on + strand, within ynjA

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml
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1,831,243 - +0.0
1,831,243 - -2.2
1,831,277 - +0.6
1,831,277 - -1.6
1,831,351 + +0.2
1,831,351 + +1.2
1,831,504 - ydjX b1750 0.11 +1.8
1,831,535 - ydjX b1750 0.15 +1.0
1,831,535 - ydjX b1750 0.15 -0.8
1,831,539 - ydjX b1750 0.16 +1.2
1,831,642 + ydjX b1750 0.31 +1.6
1,831,658 + ydjX b1750 0.33 +1.3
1,831,679 - ydjX b1750 0.36 +0.2
1,831,737 - ydjX b1750 0.44 +1.1
1,831,737 - ydjX b1750 0.44 +1.5
1,831,766 + ydjX b1750 0.48 -1.2
1,831,766 + ydjX b1750 0.48 +1.2
1,831,775 + ydjX b1750 0.49 +0.8
1,831,782 + ydjX b1750 0.50 -0.8
1,831,827 - ydjX b1750 0.57 -1.1
1,831,834 + ydjX b1750 0.58 +3.0
1,831,992 - ydjX b1750 0.80 +2.7
1,832,016 + ydjX b1750 0.83 +0.2
1,832,016 + ydjX b1750 0.83 +1.4
1,832,084 - +0.4
1,832,113 - +1.5
1,832,113 - +1.2
1,832,187 + -2.1
1,832,403 + ydjY b1751 0.39 +0.1
1,832,456 + ydjY b1751 0.47 -0.4
1,832,456 + ydjY b1751 0.47 +0.2
1,832,456 + ydjY b1751 0.47 +1.6
1,832,456 + ydjY b1751 0.47 -1.1
1,832,475 - ydjY b1751 0.49 -1.8
1,832,475 - ydjY b1751 0.49 +2.5
1,832,682 + ydjY b1751 0.80 +1.7
1,832,707 - ydjY b1751 0.84 +0.8
1,833,245 + ydjZ b1752 0.58 -2.8
1,833,394 - ydjZ b1752 0.79 -0.1
1,833,430 - ydjZ b1752 0.84 +0.6
1,833,789 + ynjA b1753 0.46 -1.6
1,833,789 + ynjA b1753 0.46 -0.9

Or see this region's nucleotide sequence