Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yddK and yddL are separated by 2 nucleotides yddL and yddG are separated by 259 nucleotides yddG and fdnG are separated by 231 nucleotides
b1471: yddK - hypothetical protein (RefSeq), at 1,542,782 to 1,543,771
yddK
b1472: yddL - predicted lipoprotein (RefSeq), at 1,543,774 to 1,544,052
yddL
b1473: yddG - predicted methyl viologen efflux pump (RefSeq), at 1,544,312 to 1,545,193
yddG
b1474: fdnG - formate dehydrogenase-N, alpha subunit, nitrate-inducible (NCBI), at 1,545,425 to 1,548,472
fdnG
Position (kb)
1544
1545
1546 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1544.334 kb on - strand at 1544.337 kb on - strand at 1544.339 kb on - strand at 1544.340 kb on - strand at 1544.349 kb on - strand at 1544.365 kb on - strand at 1544.393 kb on - strand at 1544.397 kb on + strand at 1544.405 kb on - strand, within yddG at 1544.405 kb on - strand, within yddG at 1544.405 kb on - strand, within yddG at 1544.410 kb on - strand at 1544.410 kb on - strand, within yddG at 1544.410 kb on - strand, within yddG at 1544.410 kb on - strand, within yddG at 1544.439 kb on - strand, within yddG at 1544.607 kb on - strand, within yddG at 1544.607 kb on - strand, within yddG at 1544.607 kb on - strand, within yddG at 1544.621 kb on - strand, within yddG at 1544.681 kb on - strand, within yddG at 1544.681 kb on - strand, within yddG at 1544.693 kb on - strand, within yddG at 1544.693 kb on - strand, within yddG at 1544.722 kb on - strand, within yddG at 1544.722 kb on - strand, within yddG at 1544.774 kb on - strand, within yddG at 1544.788 kb on - strand, within yddG at 1544.793 kb on - strand, within yddG at 1544.893 kb on - strand, within yddG at 1544.893 kb on - strand, within yddG at 1544.900 kb on - strand, within yddG at 1544.900 kb on - strand, within yddG at 1544.909 kb on - strand, within yddG at 1545.074 kb on + strand, within yddG at 1545.115 kb on - strand at 1545.117 kb on - strand at 1545.151 kb on - strand at 1545.151 kb on - strand at 1545.163 kb on + strand at 1545.164 kb on + strand at 1545.477 kb on + strand at 1545.491 kb on + strand at 1545.572 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml remove 1,544,334 - -0.6 1,544,337 - -1.0 1,544,339 - +2.2 1,544,340 - -1.3 1,544,349 - -0.0 1,544,365 - +0.7 1,544,393 - +0.2 1,544,397 + -0.2 1,544,405 - yddG b1473 0.11 -1.0 1,544,405 - yddG b1473 0.11 -1.7 1,544,405 - yddG b1473 0.11 -1.4 1,544,410 - +0.6 1,544,410 - yddG b1473 0.11 +1.2 1,544,410 - yddG b1473 0.11 -0.1 1,544,410 - yddG b1473 0.11 +0.2 1,544,439 - yddG b1473 0.14 +1.7 1,544,607 - yddG b1473 0.33 -0.7 1,544,607 - yddG b1473 0.33 +1.4 1,544,607 - yddG b1473 0.33 -2.0 1,544,621 - yddG b1473 0.35 -0.3 1,544,681 - yddG b1473 0.42 -0.1 1,544,681 - yddG b1473 0.42 +2.7 1,544,693 - yddG b1473 0.43 +0.9 1,544,693 - yddG b1473 0.43 +2.5 1,544,722 - yddG b1473 0.46 +3.0 1,544,722 - yddG b1473 0.46 +2.0 1,544,774 - yddG b1473 0.52 -1.3 1,544,788 - yddG b1473 0.54 +1.7 1,544,793 - yddG b1473 0.55 +0.2 1,544,893 - yddG b1473 0.66 -2.0 1,544,893 - yddG b1473 0.66 +0.0 1,544,900 - yddG b1473 0.67 -0.8 1,544,900 - yddG b1473 0.67 +1.2 1,544,909 - yddG b1473 0.68 +0.2 1,545,074 + yddG b1473 0.86 +1.5 1,545,115 - +1.0 1,545,117 - +0.8 1,545,151 - +1.6 1,545,151 - -1.4 1,545,163 + +0.2 1,545,164 + -0.8 1,545,477 + -0.2 1,545,491 + +0.7 1,545,572 + -1.7
Or see this region's nucleotide sequence