Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tehA and tehB overlap by 4 nucleotides tehB and ydcL are separated by 301 nucleotides ydcL and insP are separated by 92 nucleotides insP and insQ are separated by 67 nucleotides
b1429: tehA - potassium-tellurite ethidium and proflavin transporter (NCBI), at 1,498,597 to 1,499,589
tehA
b1430: tehB - predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI), at 1,499,586 to 1,500,179
tehB
b1431: ydcL - predicted lipoprotein (NCBI), at 1,500,481 to 1,501,149
ydcL
b4578: insP - no description, at 1,501,242 to 1,501,673
insP
b1432: insQ - IS609 transposase B (RefSeq), at 1,501,741 to 1,502,889
insQ
Position (kb)
1500
1501
1502 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1499.640 kb on + strand at 1499.650 kb on - strand, within tehB at 1499.699 kb on - strand, within tehB at 1499.709 kb on - strand, within tehB at 1499.726 kb on + strand, within tehB at 1499.741 kb on - strand, within tehB at 1499.831 kb on - strand, within tehB at 1499.859 kb on - strand, within tehB at 1499.991 kb on + strand, within tehB at 1499.991 kb on + strand, within tehB at 1500.069 kb on + strand, within tehB at 1500.069 kb on + strand, within tehB at 1500.113 kb on - strand, within tehB at 1500.128 kb on + strand at 1500.128 kb on + strand at 1500.191 kb on - strand at 1500.191 kb on - strand at 1500.496 kb on - strand at 1500.496 kb on - strand at 1500.540 kb on - strand at 1500.542 kb on - strand at 1500.685 kb on + strand, within ydcL at 1500.726 kb on + strand, within ydcL at 1500.762 kb on + strand, within ydcL at 1500.946 kb on + strand, within ydcL at 1501.107 kb on + strand at 1501.107 kb on + strand at 1501.126 kb on - strand at 1501.226 kb on - strand at 1501.226 kb on - strand at 1501.257 kb on + strand at 1501.305 kb on - strand, within insP at 1501.305 kb on - strand, within insP at 1501.361 kb on - strand, within insP at 1501.430 kb on - strand, within insP at 1501.472 kb on - strand, within insP at 1501.681 kb on + strand at 1501.681 kb on + strand at 1501.929 kb on + strand, within insQ
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml remove 1,499,640 + -0.9 1,499,650 - tehB b1430 0.11 -1.2 1,499,699 - tehB b1430 0.19 +1.1 1,499,709 - tehB b1430 0.21 +1.8 1,499,726 + tehB b1430 0.24 +1.1 1,499,741 - tehB b1430 0.26 -1.9 1,499,831 - tehB b1430 0.41 +0.1 1,499,859 - tehB b1430 0.46 +0.6 1,499,991 + tehB b1430 0.68 -0.3 1,499,991 + tehB b1430 0.68 +1.5 1,500,069 + tehB b1430 0.81 -1.0 1,500,069 + tehB b1430 0.81 -0.9 1,500,113 - tehB b1430 0.89 +1.1 1,500,128 + +0.1 1,500,128 + -1.0 1,500,191 - +2.2 1,500,191 - -0.4 1,500,496 - +0.3 1,500,496 - +0.8 1,500,540 - -0.9 1,500,542 - +0.8 1,500,685 + ydcL b1431 0.30 +1.1 1,500,726 + ydcL b1431 0.37 +0.9 1,500,762 + ydcL b1431 0.42 +2.5 1,500,946 + ydcL b1431 0.70 +1.8 1,501,107 + -2.2 1,501,107 + -0.2 1,501,126 - -1.1 1,501,226 - +0.1 1,501,226 - -0.5 1,501,257 + +0.0 1,501,305 - insP b4578 0.15 +3.7 1,501,305 - insP b4578 0.15 +1.1 1,501,361 - insP b4578 0.28 +0.9 1,501,430 - insP b4578 0.44 +0.9 1,501,472 - insP b4578 0.53 +1.1 1,501,681 + +1.6 1,501,681 + -0.8 1,501,929 + insQ b1432 0.16 -1.3
Or see this region's nucleotide sequence