Strain Fitness in Escherichia coli BW25113 around b1414
Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.1 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 1,484,433 | + | hrpA | b1413 | 0.86 | +1.5 |
| 1,484,566 | - | hrpA | b1413 | 0.89 | +0.2 |
| 1,484,615 | - | -1.2 | |||
| 1,484,883 | + | +0.4 | |||
| 1,484,883 | + | -0.5 | |||
| 1,485,446 | + | ydcF | b1414 | 0.23 | +0.4 |
| 1,485,502 | + | ydcF | b1414 | 0.30 | +0.4 |
| 1,485,553 | - | ydcF | b1414 | 0.37 | -1.2 |
| 1,485,833 | + | ydcF | b1414 | 0.72 | -2.5 |
| 1,485,869 | - | ydcF | b1414 | 0.76 | -1.5 |
| 1,485,881 | + | ydcF | b1414 | 0.78 | -1.2 |
| 1,485,881 | + | ydcF | b1414 | 0.78 | -1.2 |
| 1,485,887 | - | ydcF | b1414 | 0.78 | +0.2 |
| 1,485,899 | - | ydcF | b1414 | 0.80 | -2.0 |
| 1,485,899 | - | ydcF | b1414 | 0.80 | +0.2 |
| 1,486,182 | - | +0.1 | |||
| 1,486,274 | - | +0.5 | |||
| 1,486,276 | - | +0.5 | |||
| 1,486,276 | - | +1.1 | |||
| 1,486,392 | + | +0.1 | |||
| 1,486,392 | + | -0.5 | |||
| 1,486,401 | - | aldA | b1415 | 0.10 | -0.5 |
| 1,486,401 | - | aldA | b1415 | 0.10 | -1.2 |
| 1,486,721 | - | aldA | b1415 | 0.32 | -1.2 |
| 1,486,932 | + | aldA | b1415 | 0.47 | +0.1 |
| 1,486,932 | + | aldA | b1415 | 0.47 | +1.0 |
Or see this region's nucleotide sequence