Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt appC and appB are separated by 11 nucleotides appB and yccB are separated by 12 nucleotides yccB and appA are separated by 79 nucleotides
b0978: appC - cytochrome bd-II oxidase, subunit I (NCBI), at 1,036,963 to 1,038,507
appC
b0979: appB - cytochrome bd-II oxidase, subunit II (NCBI), at 1,038,519 to 1,039,655
appB
b4592: yccB - hypothetical protein (RefSeq), at 1,039,668 to 1,039,760
yccB
b0980: appA - phosphoanhydride phosphorylase (NCBI), at 1,039,840 to 1,041,138
appA
Position (kb)
1038
1039
1040 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1037.766 kb on + strand, within appC at 1037.904 kb on - strand, within appC at 1037.904 kb on - strand, within appC at 1037.934 kb on - strand, within appC at 1037.988 kb on - strand, within appC at 1037.988 kb on - strand, within appC at 1038.009 kb on - strand, within appC at 1038.093 kb on - strand, within appC at 1038.110 kb on - strand, within appC at 1038.170 kb on - strand, within appC at 1038.224 kb on - strand, within appC at 1038.248 kb on - strand, within appC at 1038.293 kb on - strand, within appC at 1038.293 kb on - strand, within appC at 1038.327 kb on - strand, within appC at 1038.336 kb on + strand, within appC at 1038.377 kb on + strand at 1038.395 kb on - strand at 1038.805 kb on - strand, within appB at 1039.201 kb on + strand, within appB at 1039.201 kb on + strand, within appB at 1039.201 kb on + strand, within appB at 1039.209 kb on - strand, within appB at 1039.209 kb on - strand, within appB at 1039.263 kb on + strand, within appB at 1039.453 kb on - strand, within appB at 1039.453 kb on - strand, within appB at 1039.528 kb on + strand, within appB at 1039.566 kb on + strand at 1039.581 kb on + strand at 1039.617 kb on + strand at 1039.728 kb on - strand, within yccB at 1039.730 kb on + strand, within yccB at 1039.730 kb on + strand, within yccB at 1039.764 kb on + strand at 1039.829 kb on + strand at 1039.878 kb on - strand at 1039.903 kb on + strand at 1039.903 kb on + strand at 1039.916 kb on - strand at 1039.950 kb on + strand at 1039.950 kb on + strand at 1039.950 kb on + strand at 1039.960 kb on - strand at 1040.065 kb on - strand, within appA at 1040.184 kb on - strand, within appA at 1040.226 kb on - strand, within appA at 1040.254 kb on + strand, within appA at 1040.348 kb on - strand, within appA
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml remove 1,037,766 + appC b0978 0.52 -1.4 1,037,904 - appC b0978 0.61 +1.1 1,037,904 - appC b0978 0.61 +2.9 1,037,934 - appC b0978 0.63 -1.2 1,037,988 - appC b0978 0.66 -0.9 1,037,988 - appC b0978 0.66 +0.5 1,038,009 - appC b0978 0.68 -0.7 1,038,093 - appC b0978 0.73 +0.9 1,038,110 - appC b0978 0.74 -0.3 1,038,170 - appC b0978 0.78 +0.4 1,038,224 - appC b0978 0.82 +0.7 1,038,248 - appC b0978 0.83 +0.2 1,038,293 - appC b0978 0.86 -0.1 1,038,293 - appC b0978 0.86 +0.2 1,038,327 - appC b0978 0.88 -0.4 1,038,336 + appC b0978 0.89 -1.4 1,038,377 + -1.6 1,038,395 - +1.0 1,038,805 - appB b0979 0.25 +0.7 1,039,201 + appB b0979 0.60 +0.5 1,039,201 + appB b0979 0.60 -0.6 1,039,201 + appB b0979 0.60 +2.6 1,039,209 - appB b0979 0.61 +1.2 1,039,209 - appB b0979 0.61 +0.6 1,039,263 + appB b0979 0.65 +1.2 1,039,453 - appB b0979 0.82 +2.1 1,039,453 - appB b0979 0.82 -1.5 1,039,528 + appB b0979 0.89 +0.2 1,039,566 + -0.9 1,039,581 + -0.4 1,039,617 + +0.2 1,039,728 - yccB b4592 0.65 -0.4 1,039,730 + yccB b4592 0.67 -0.4 1,039,730 + yccB b4592 0.67 +1.0 1,039,764 + +1.0 1,039,829 + -0.4 1,039,878 - +1.6 1,039,903 + -1.1 1,039,903 + -0.4 1,039,916 - +0.2 1,039,950 + -1.6 1,039,950 + -0.9 1,039,950 + -1.8 1,039,960 - -0.9 1,040,065 - appA b0980 0.17 +0.9 1,040,184 - appA b0980 0.26 +2.7 1,040,226 - appA b0980 0.30 +2.1 1,040,254 + appA b0980 0.32 +1.1 1,040,348 - appA b0980 0.39 -0.5
Or see this region's nucleotide sequence