Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yccW and yccX are separated by 94 nucleotides yccX and yccK overlap by 4 nucleotides yccK and yccA are separated by 90 nucleotides yccA and serT are separated by 206 nucleotides serT and hyaA are separated by 426 nucleotides
b0967: yccW - predicted methyltransferase (RefSeq), at 1,028,002 to 1,029,192
yccW
b0968: yccX - predicted acylphosphatase (NCBI), at 1,029,287 to 1,029,565
yccX
b0969: yccK - putative sulfite reductase (EC 1.8.-.-) (VIMSS), at 1,029,562 to 1,029,891
yccK
b0970: yccA - inner membrane protein (NCBI), at 1,029,982 to 1,030,641
yccA
b0971: serT - tRNA-Ser (NCBI), at 1,030,848 to 1,030,935
serT
b0972: hyaA - hydrogenase 1, small subunit (NCBI), at 1,031,362 to 1,032,480
hyaA
Position (kb)
1029
1030
1031 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1028.984 kb on - strand, within yccW at 1029.155 kb on - strand at 1029.171 kb on - strand at 1029.269 kb on + strand at 1029.273 kb on - strand at 1029.273 kb on - strand at 1029.279 kb on - strand at 1029.322 kb on - strand, within yccX at 1029.322 kb on - strand, within yccX at 1029.343 kb on + strand, within yccX at 1029.348 kb on + strand, within yccX at 1029.477 kb on - strand, within yccX at 1029.477 kb on - strand, within yccX at 1029.501 kb on + strand, within yccX at 1029.529 kb on - strand, within yccX at 1029.529 kb on - strand, within yccX at 1029.860 kb on + strand at 1029.960 kb on + strand at 1029.980 kb on + strand at 1029.980 kb on + strand at 1030.084 kb on + strand, within yccA at 1030.154 kb on + strand, within yccA at 1030.275 kb on + strand, within yccA at 1030.314 kb on + strand, within yccA at 1030.314 kb on + strand, within yccA at 1030.322 kb on - strand, within yccA at 1030.322 kb on - strand, within yccA at 1030.556 kb on - strand, within yccA at 1030.592 kb on - strand at 1030.592 kb on - strand at 1030.597 kb on + strand at 1030.613 kb on - strand at 1030.700 kb on - strand at 1030.756 kb on + strand at 1030.830 kb on - strand at 1030.955 kb on - strand at 1031.232 kb on + strand at 1031.317 kb on - strand at 1031.352 kb on + strand at 1031.352 kb on + strand at 1031.352 kb on - strand at 1031.352 kb on - strand at 1031.405 kb on + strand at 1031.438 kb on - strand at 1031.458 kb on + strand at 1031.478 kb on + strand, within hyaA at 1031.511 kb on + strand, within hyaA at 1031.552 kb on + strand, within hyaA
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml remove 1,028,984 - yccW b0967 0.82 +1.0 1,029,155 - -1.4 1,029,171 - +1.2 1,029,269 + +0.2 1,029,273 - +0.2 1,029,273 - +2.8 1,029,279 - +0.2 1,029,322 - yccX b0968 0.13 +3.2 1,029,322 - yccX b0968 0.13 +0.2 1,029,343 + yccX b0968 0.20 +1.2 1,029,348 + yccX b0968 0.22 -2.6 1,029,477 - yccX b0968 0.68 -0.8 1,029,477 - yccX b0968 0.68 -0.8 1,029,501 + yccX b0968 0.77 +2.8 1,029,529 - yccX b0968 0.87 +2.9 1,029,529 - yccX b0968 0.87 -1.8 1,029,860 + +2.2 1,029,960 + -0.8 1,029,980 + +0.0 1,029,980 + -2.0 1,030,084 + yccA b0970 0.15 -0.4 1,030,154 + yccA b0970 0.26 -0.8 1,030,275 + yccA b0970 0.44 -2.9 1,030,314 + yccA b0970 0.50 -2.9 1,030,314 + yccA b0970 0.50 +0.7 1,030,322 - yccA b0970 0.52 -1.8 1,030,322 - yccA b0970 0.52 -1.4 1,030,556 - yccA b0970 0.87 -1.4 1,030,592 - +1.4 1,030,592 - -1.1 1,030,597 + -0.1 1,030,613 - -1.8 1,030,700 - -1.4 1,030,756 + -0.0 1,030,830 - -2.6 1,030,955 - +1.4 1,031,232 + +2.4 1,031,317 - +0.7 1,031,352 + -1.6 1,031,352 + -1.1 1,031,352 - +0.6 1,031,352 - +1.1 1,031,405 + +1.2 1,031,438 - -0.4 1,031,458 + -0.1 1,031,478 + hyaA b0972 0.10 -0.6 1,031,511 + hyaA b0972 0.13 -1.6 1,031,552 + hyaA b0972 0.17 -0.3
Or see this region's nucleotide sequence