Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhF and ybhG overlap by 8 nucleotides ybhG and ybiH overlap by 1 nucleotides ybiH and rhlE are separated by 228 nucleotides
b0794: ybhF - putative ATP-binding component of a transport system (VIMSS), at 826,468 to 828,204
ybhF
b0795: ybhG - hypothetical protein (NCBI), at 828,197 to 829,195
ybhG
b0796: ybiH - putative transcriptional regulator (VIMSS), at 829,195 to 829,866
ybiH
b0797: rhlE - RNA helicase (NCBI), at 830,095 to 831,459
rhlE
Position (kb) 829
830 Strain fitness (log2 ratio) -2
-1
0
1
2 at 828.197 kb on + strand at 828.197 kb on + strand at 828.205 kb on - strand at 828.207 kb on - strand at 828.311 kb on - strand, within ybhG at 828.410 kb on - strand, within ybhG at 828.469 kb on + strand, within ybhG at 828.502 kb on - strand, within ybhG at 828.504 kb on + strand, within ybhG at 828.528 kb on - strand, within ybhG at 828.528 kb on - strand, within ybhG at 828.620 kb on - strand, within ybhG at 828.725 kb on - strand, within ybhG at 828.876 kb on + strand, within ybhG at 828.906 kb on - strand, within ybhG at 828.949 kb on - strand, within ybhG at 828.953 kb on + strand, within ybhG at 828.959 kb on - strand, within ybhG at 828.959 kb on - strand, within ybhG at 828.978 kb on + strand, within ybhG at 828.978 kb on + strand, within ybhG at 829.047 kb on - strand at 829.088 kb on - strand, within ybhG at 829.093 kb on - strand, within ybhG at 829.295 kb on - strand, within ybiH at 829.360 kb on + strand, within ybiH at 829.360 kb on + strand, within ybiH at 829.535 kb on - strand, within ybiH at 829.598 kb on + strand, within ybiH at 829.679 kb on + strand, within ybiH at 829.841 kb on - strand at 829.841 kb on - strand at 829.845 kb on - strand at 829.858 kb on + strand at 829.996 kb on + strand at 830.051 kb on + strand at 830.059 kb on + strand at 830.059 kb on + strand at 830.123 kb on + strand at 830.123 kb on + strand at 830.123 kb on + strand at 830.146 kb on + strand at 830.156 kb on + strand at 830.159 kb on - strand at 830.176 kb on - strand at 830.182 kb on + strand at 830.182 kb on + strand at 830.192 kb on - strand at 830.249 kb on - strand, within rhlE at 830.277 kb on - strand, within rhlE at 830.277 kb on - strand, within rhlE at 830.333 kb on + strand, within rhlE at 830.333 kb on + strand, within rhlE at 830.335 kb on - strand, within rhlE at 830.335 kb on - strand, within rhlE at 830.341 kb on - strand, within rhlE at 830.390 kb on + strand, within rhlE at 830.531 kb on + strand, within rhlE at 830.836 kb on + strand, within rhlE at 830.850 kb on - strand, within rhlE at 830.860 kb on - strand, within rhlE at 830.860 kb on - strand, within rhlE
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml remove 828,197 + +0.0 828,197 + +1.4 828,205 - +0.6 828,207 - +1.8 828,311 - ybhG b0795 0.11 -0.8 828,410 - ybhG b0795 0.21 -1.3 828,469 + ybhG b0795 0.27 +0.1 828,502 - ybhG b0795 0.31 -1.0 828,504 + ybhG b0795 0.31 +1.6 828,528 - ybhG b0795 0.33 -0.7 828,528 - ybhG b0795 0.33 -0.2 828,620 - ybhG b0795 0.42 -1.5 828,725 - ybhG b0795 0.53 -0.6 828,876 + ybhG b0795 0.68 +0.7 828,906 - ybhG b0795 0.71 -0.8 828,949 - ybhG b0795 0.75 -0.1 828,953 + ybhG b0795 0.76 -0.4 828,959 - ybhG b0795 0.76 +0.3 828,959 - ybhG b0795 0.76 -0.0 828,978 + ybhG b0795 0.78 +0.5 828,978 + ybhG b0795 0.78 -0.4 829,047 - +0.2 829,088 - ybhG b0795 0.89 -2.0 829,093 - ybhG b0795 0.90 +0.0 829,295 - ybiH b0796 0.15 -1.5 829,360 + ybiH b0796 0.25 -1.0 829,360 + ybiH b0796 0.25 +0.7 829,535 - ybiH b0796 0.51 +0.0 829,598 + ybiH b0796 0.60 -0.4 829,679 + ybiH b0796 0.72 -0.6 829,841 - -1.0 829,841 - -0.6 829,845 - +0.2 829,858 + -1.1 829,996 + -0.4 830,051 + -0.8 830,059 + -0.8 830,059 + +0.5 830,123 + -0.7 830,123 + -0.9 830,123 + +1.6 830,146 + -0.6 830,156 + +0.2 830,159 - +1.3 830,176 - -0.4 830,182 + +1.6 830,182 + +0.8 830,192 - -0.6 830,249 - rhlE b0797 0.11 -1.4 830,277 - rhlE b0797 0.13 +2.1 830,277 - rhlE b0797 0.13 +1.9 830,333 + rhlE b0797 0.17 -1.1 830,333 + rhlE b0797 0.17 +0.2 830,335 - rhlE b0797 0.18 +1.7 830,335 - rhlE b0797 0.18 +0.4 830,341 - rhlE b0797 0.18 -1.0 830,390 + rhlE b0797 0.22 +0.5 830,531 + rhlE b0797 0.32 +0.4 830,836 + rhlE b0797 0.54 +2.4 830,850 - rhlE b0797 0.55 -1.3 830,860 - rhlE b0797 0.56 -1.8 830,860 - rhlE b0797 0.56 +0.3
Or see this region's nucleotide sequence