Strain Fitness in Escherichia coli BW25113 around b0786

Experiment: Cisplatin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmoaC and moaD overlap by 8 nucleotidesmoaD and moaE are separated by 1 nucleotidesmoaE and ybhL are separated by 136 nucleotidesybhL and ybhM are separated by 204 nucleotidesybhM and ybhN are separated by 35 nucleotides b0783: moaC - molybdenum cofactor biosynthesis protein C (NCBI), at 817,793 to 818,278 moaC b0784: moaD - molybdopterin synthase, small subunit (NCBI), at 818,271 to 818,516 moaD b0785: moaE - molybdopterin synthase, large subunit (NCBI), at 818,518 to 818,970 moaE b0786: ybhL - predicted inner membrane protein (NCBI), at 819,107 to 819,811 ybhL b0787: ybhM - conserved inner membrane protein (NCBI), at 820,016 to 820,729 ybhM b0788: ybhN - conserved inner membrane protein (NCBI), at 820,765 to 821,721 ybhN Position (kb) 819 820Strain fitness (log2 ratio) -2 -1 0 1 2at 818.167 kb on - strand, within moaCat 818.211 kb on + strand, within moaCat 818.219 kb on - strand, within moaCat 818.219 kb on - strand, within moaCat 818.252 kb on + strandat 818.252 kb on + strandat 818.369 kb on + strand, within moaDat 818.455 kb on + strand, within moaDat 818.455 kb on + strand, within moaDat 818.566 kb on - strand, within moaEat 818.566 kb on - strand, within moaEat 818.566 kb on - strand, within moaEat 818.677 kb on - strand, within moaEat 818.687 kb on - strand, within moaEat 818.764 kb on - strand, within moaEat 818.892 kb on - strand, within moaEat 818.926 kb on + strandat 818.940 kb on - strandat 819.022 kb on + strandat 819.025 kb on - strandat 819.154 kb on + strandat 819.210 kb on + strand, within ybhLat 819.259 kb on + strand, within ybhLat 819.314 kb on + strand, within ybhLat 819.314 kb on + strand, within ybhLat 819.354 kb on + strand, within ybhLat 819.408 kb on + strand, within ybhLat 819.490 kb on + strand, within ybhLat 819.490 kb on + strand, within ybhLat 819.493 kb on + strand, within ybhLat 819.500 kb on + strand, within ybhLat 819.500 kb on + strand, within ybhLat 819.553 kb on - strand, within ybhLat 819.568 kb on - strand, within ybhLat 819.568 kb on - strand, within ybhLat 819.599 kb on + strand, within ybhLat 819.606 kb on + strand, within ybhLat 819.612 kb on - strand, within ybhLat 819.614 kb on + strand, within ybhLat 819.614 kb on + strand, within ybhLat 819.614 kb on + strand, within ybhLat 819.616 kb on + strand, within ybhLat 819.617 kb on + strand, within ybhLat 819.625 kb on - strand, within ybhLat 819.647 kb on - strand, within ybhLat 819.657 kb on + strand, within ybhLat 819.691 kb on + strand, within ybhLat 819.691 kb on + strand, within ybhLat 819.691 kb on + strand, within ybhLat 819.762 kb on + strandat 819.770 kb on - strandat 819.825 kb on + strandat 819.825 kb on + strandat 819.825 kb on + strandat 819.825 kb on + strandat 819.825 kb on + strandat 819.825 kb on + strandat 819.830 kb on + strandat 819.830 kb on + strandat 819.833 kb on - strandat 819.833 kb on - strandat 819.887 kb on + strandat 819.888 kb on + strandat 819.888 kb on + strandat 819.961 kb on + strandat 820.088 kb on - strand, within ybhMat 820.106 kb on - strand, within ybhMat 820.115 kb on + strand, within ybhMat 820.134 kb on - strand, within ybhMat 820.134 kb on - strand, within ybhMat 820.134 kb on - strand, within ybhMat 820.322 kb on + strand, within ybhMat 820.322 kb on + strand, within ybhMat 820.332 kb on + strand, within ybhMat 820.350 kb on - strand, within ybhMat 820.445 kb on - strand, within ybhMat 820.448 kb on - strand, within ybhMat 820.452 kb on + strand, within ybhMat 820.454 kb on - strand, within ybhMat 820.454 kb on - strand, within ybhMat 820.454 kb on - strand, within ybhMat 820.485 kb on - strand, within ybhMat 820.528 kb on - strand, within ybhMat 820.528 kb on - strand, within ybhMat 820.536 kb on - strand, within ybhMat 820.573 kb on + strand, within ybhMat 820.581 kb on - strand, within ybhMat 820.590 kb on - strand, within ybhMat 820.597 kb on + strand, within ybhMat 820.598 kb on - strand, within ybhMat 820.599 kb on + strand, within ybhMat 820.599 kb on + strand, within ybhMat 820.605 kb on - strand, within ybhMat 820.605 kb on - strand, within ybhMat 820.605 kb on - strand, within ybhMat 820.608 kb on - strand, within ybhMat 820.613 kb on - strand, within ybhMat 820.613 kb on - strand, within ybhMat 820.620 kb on + strand, within ybhMat 820.620 kb on + strand, within ybhMat 820.628 kb on - strand, within ybhMat 820.638 kb on - strand, within ybhMat 820.663 kb on + strandat 820.663 kb on + strandat 820.685 kb on + strandat 820.686 kb on + strandat 820.686 kb on + strandat 820.693 kb on - strandat 820.693 kb on - strandat 820.694 kb on - strandat 820.694 kb on - strandat 820.699 kb on - strandat 820.702 kb on - strandat 820.715 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml
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818,167 - moaC b0783 0.77 +0.8
818,211 + moaC b0783 0.86 -2.3
818,219 - moaC b0783 0.88 +2.1
818,219 - moaC b0783 0.88 +1.6
818,252 + +0.3
818,252 + +1.1
818,369 + moaD b0784 0.40 +2.1
818,455 + moaD b0784 0.75 +0.1
818,455 + moaD b0784 0.75 -1.9
818,566 - moaE b0785 0.11 +0.4
818,566 - moaE b0785 0.11 +1.2
818,566 - moaE b0785 0.11 +1.6
818,677 - moaE b0785 0.35 +0.8
818,687 - moaE b0785 0.37 -0.4
818,764 - moaE b0785 0.54 +2.2
818,892 - moaE b0785 0.83 -1.2
818,926 + +0.8
818,940 - +1.7
819,022 + -1.2
819,025 - -0.1
819,154 + -1.2
819,210 + ybhL b0786 0.15 -1.7
819,259 + ybhL b0786 0.22 -0.9
819,314 + ybhL b0786 0.29 +1.0
819,314 + ybhL b0786 0.29 -0.6
819,354 + ybhL b0786 0.35 -0.4
819,408 + ybhL b0786 0.43 -2.4
819,490 + ybhL b0786 0.54 +1.1
819,490 + ybhL b0786 0.54 -1.3
819,493 + ybhL b0786 0.55 +1.2
819,500 + ybhL b0786 0.56 -1.9
819,500 + ybhL b0786 0.56 +0.4
819,553 - ybhL b0786 0.63 -1.9
819,568 - ybhL b0786 0.65 +1.1
819,568 - ybhL b0786 0.65 +1.0
819,599 + ybhL b0786 0.70 +0.1
819,606 + ybhL b0786 0.71 +1.0
819,612 - ybhL b0786 0.72 +0.8
819,614 + ybhL b0786 0.72 +0.1
819,614 + ybhL b0786 0.72 +0.6
819,614 + ybhL b0786 0.72 -2.0
819,616 + ybhL b0786 0.72 -0.6
819,617 + ybhL b0786 0.72 -1.0
819,625 - ybhL b0786 0.73 +0.5
819,647 - ybhL b0786 0.77 -1.2
819,657 + ybhL b0786 0.78 +1.1
819,691 + ybhL b0786 0.83 -1.0
819,691 + ybhL b0786 0.83 +0.2
819,691 + ybhL b0786 0.83 -1.1
819,762 + -0.3
819,770 - -0.7
819,825 + +1.0
819,825 + +0.9
819,825 + -1.2
819,825 + -1.7
819,825 + +2.3
819,825 + -1.9
819,830 + +0.4
819,830 + +1.2
819,833 - +0.4
819,833 - -0.9
819,887 + -2.2
819,888 + -1.9
819,888 + +0.3
819,961 + +0.3
820,088 - ybhM b0787 0.10 +2.3
820,106 - ybhM b0787 0.13 -0.4
820,115 + ybhM b0787 0.14 -0.9
820,134 - ybhM b0787 0.17 -0.9
820,134 - ybhM b0787 0.17 -2.6
820,134 - ybhM b0787 0.17 -1.4
820,322 + ybhM b0787 0.43 -1.4
820,322 + ybhM b0787 0.43 +1.9
820,332 + ybhM b0787 0.44 -1.2
820,350 - ybhM b0787 0.47 -0.6
820,445 - ybhM b0787 0.60 -2.0
820,448 - ybhM b0787 0.61 +0.0
820,452 + ybhM b0787 0.61 -2.5
820,454 - ybhM b0787 0.61 +0.3
820,454 - ybhM b0787 0.61 +1.0
820,454 - ybhM b0787 0.61 -1.2
820,485 - ybhM b0787 0.66 -0.6
820,528 - ybhM b0787 0.72 +0.8
820,528 - ybhM b0787 0.72 -0.2
820,536 - ybhM b0787 0.73 +0.3
820,573 + ybhM b0787 0.78 -0.4
820,581 - ybhM b0787 0.79 -1.7
820,590 - ybhM b0787 0.80 +1.1
820,597 + ybhM b0787 0.81 +1.3
820,598 - ybhM b0787 0.82 -0.6
820,599 + ybhM b0787 0.82 -0.0
820,599 + ybhM b0787 0.82 -1.7
820,605 - ybhM b0787 0.82 -0.1
820,605 - ybhM b0787 0.82 +1.1
820,605 - ybhM b0787 0.82 +1.1
820,608 - ybhM b0787 0.83 +0.1
820,613 - ybhM b0787 0.84 +2.1
820,613 - ybhM b0787 0.84 +0.2
820,620 + ybhM b0787 0.85 -0.6
820,620 + ybhM b0787 0.85 +2.0
820,628 - ybhM b0787 0.86 +0.5
820,638 - ybhM b0787 0.87 +0.1
820,663 + +1.4
820,663 + +0.7
820,685 + +2.5
820,686 + +0.7
820,686 + -0.3
820,693 - +1.2
820,693 - +0.8
820,694 - -1.4
820,694 - +0.7
820,699 - -0.9
820,702 - -1.9
820,715 - +1.8

Or see this region's nucleotide sequence