Experiment: Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybcL and ybcM are separated by 9 nucleotides ybcM and ylcH are separated by 116 nucleotides ylcH and ybcN overlap by 4 nucleotides ybcN and ninE overlap by 1 nucleotides ninE and ybcO overlap by 8 nucleotides
b0545: ybcL - DLP12 prophage; predicted kinase inhibitor (NCBI), at 570,116 to 570,667
ybcL
b0546: ybcM - DLP12 prophage; predicted DNA-binding transcriptional regulator (NCBI), at 570,677 to 571,474
ybcM
b4588: ylcH - hypothetical protein, DLP12 prophage (RefSeq), at 571,591 to 571,692
ylcH
b0547: ybcN - DLP12 prophage; predicted protein (NCBI), at 571,689 to 572,144
ybcN
b0548: ninE - DLP12 prophage; conserved protein (NCBI), at 572,144 to 572,314
ninE
b0549: ybcO - DLP12 prophage; predicted protein (NCBI), at 572,307 to 572,597
ybcO
Position (kb) 570
571
572 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 569.954 kb on - strand at 569.991 kb on - strand at 569.991 kb on - strand at 570.177 kb on - strand, within ybcL at 570.182 kb on - strand, within ybcL at 570.217 kb on + strand, within ybcL at 570.217 kb on - strand, within ybcL at 570.225 kb on - strand, within ybcL at 570.235 kb on - strand, within ybcL at 570.236 kb on - strand, within ybcL at 570.259 kb on + strand, within ybcL at 570.265 kb on - strand, within ybcL at 570.267 kb on - strand, within ybcL at 570.273 kb on - strand, within ybcL at 570.276 kb on + strand, within ybcL at 570.283 kb on - strand, within ybcL at 570.289 kb on - strand, within ybcL at 570.289 kb on - strand at 570.293 kb on + strand, within ybcL at 570.295 kb on + strand, within ybcL at 570.296 kb on + strand, within ybcL at 570.302 kb on - strand, within ybcL at 570.302 kb on - strand, within ybcL at 570.305 kb on + strand, within ybcL at 570.305 kb on + strand, within ybcL at 570.312 kb on + strand, within ybcL at 570.323 kb on + strand, within ybcL at 570.323 kb on + strand, within ybcL at 570.332 kb on - strand, within ybcL at 570.342 kb on + strand, within ybcL at 570.343 kb on + strand, within ybcL at 570.343 kb on + strand, within ybcL at 570.344 kb on + strand, within ybcL at 570.350 kb on - strand, within ybcL at 570.351 kb on - strand, within ybcL at 570.354 kb on - strand, within ybcL at 570.356 kb on + strand, within ybcL at 570.364 kb on + strand, within ybcL at 570.364 kb on + strand, within ybcL at 570.372 kb on - strand, within ybcL at 570.374 kb on + strand, within ybcL at 570.374 kb on + strand, within ybcL at 570.382 kb on - strand, within ybcL at 570.401 kb on + strand, within ybcL at 570.401 kb on + strand, within ybcL at 570.409 kb on + strand, within ybcL at 570.418 kb on + strand, within ybcL at 570.440 kb on + strand, within ybcL at 570.445 kb on + strand, within ybcL at 570.450 kb on + strand, within ybcL at 570.455 kb on + strand, within ybcL at 570.455 kb on + strand, within ybcL at 570.455 kb on + strand, within ybcL at 570.458 kb on - strand, within ybcL at 570.480 kb on + strand, within ybcL at 570.482 kb on + strand, within ybcL at 570.488 kb on - strand, within ybcL at 570.496 kb on + strand, within ybcL at 570.496 kb on + strand, within ybcL at 570.501 kb on + strand, within ybcL at 570.501 kb on + strand, within ybcL at 570.505 kb on + strand, within ybcL at 570.514 kb on + strand, within ybcL at 570.535 kb on + strand, within ybcL at 570.535 kb on + strand, within ybcL at 570.535 kb on + strand, within ybcL at 570.535 kb on + strand, within ybcL at 570.535 kb on + strand, within ybcL at 570.535 kb on + strand, within ybcL at 570.566 kb on + strand, within ybcL at 570.576 kb on + strand, within ybcL at 570.581 kb on + strand, within ybcL at 570.625 kb on + strand at 570.644 kb on + strand at 570.650 kb on + strand at 570.650 kb on + strand at 570.661 kb on + strand at 570.665 kb on - strand at 570.668 kb on + strand at 570.668 kb on + strand at 570.672 kb on + strand at 570.675 kb on - strand at 570.675 kb on - strand at 570.675 kb on - strand at 570.682 kb on + strand at 570.682 kb on + strand at 570.688 kb on + strand at 570.688 kb on + strand at 570.697 kb on - strand at 570.772 kb on + strand, within ybcM at 570.772 kb on + strand, within ybcM at 570.804 kb on + strand, within ybcM at 570.804 kb on + strand, within ybcM at 570.804 kb on + strand, within ybcM at 570.804 kb on + strand, within ybcM at 570.804 kb on + strand, within ybcM at 570.817 kb on + strand, within ybcM at 570.992 kb on + strand, within ybcM at 570.992 kb on + strand, within ybcM at 571.055 kb on + strand, within ybcM at 571.084 kb on - strand, within ybcM at 571.094 kb on - strand, within ybcM at 571.105 kb on + strand, within ybcM at 571.115 kb on + strand, within ybcM at 571.124 kb on - strand, within ybcM at 571.130 kb on - strand, within ybcM at 571.170 kb on - strand, within ybcM at 571.186 kb on + strand, within ybcM at 571.207 kb on + strand, within ybcM at 571.207 kb on + strand, within ybcM at 571.215 kb on - strand, within ybcM at 571.226 kb on + strand, within ybcM at 571.283 kb on + strand, within ybcM at 571.301 kb on + strand, within ybcM at 571.301 kb on + strand, within ybcM at 571.306 kb on + strand, within ybcM at 571.340 kb on + strand, within ybcM at 571.340 kb on + strand, within ybcM at 571.340 kb on + strand, within ybcM at 571.341 kb on - strand, within ybcM at 571.345 kb on - strand, within ybcM at 571.418 kb on + strand at 571.427 kb on + strand at 571.477 kb on - strand at 571.486 kb on - strand at 571.546 kb on - strand at 571.560 kb on - strand at 571.575 kb on - strand at 571.575 kb on - strand at 571.585 kb on - strand at 571.596 kb on + strand at 571.596 kb on - strand at 571.596 kb on - strand at 571.602 kb on - strand, within ylcH at 571.618 kb on + strand, within ylcH at 571.623 kb on - strand, within ylcH at 571.629 kb on + strand, within ylcH at 571.638 kb on - strand, within ylcH at 571.671 kb on + strand, within ylcH at 571.681 kb on + strand, within ylcH at 571.681 kb on + strand, within ylcH at 571.682 kb on - strand at 571.682 kb on - strand at 571.682 kb on - strand at 571.682 kb on - strand at 571.682 kb on - strand at 571.682 kb on - strand at 571.682 kb on - strand at 571.687 kb on + strand at 571.694 kb on - strand at 571.695 kb on - strand at 571.752 kb on + strand, within ybcN at 571.752 kb on + strand, within ybcN at 571.909 kb on + strand, within ybcN at 571.931 kb on + strand, within ybcN at 571.937 kb on - strand, within ybcN at 571.939 kb on - strand, within ybcN at 571.939 kb on - strand, within ybcN at 572.055 kb on + strand, within ybcN at 572.068 kb on - strand, within ybcN at 572.179 kb on + strand, within ninE at 572.179 kb on + strand, within ninE at 572.179 kb on + strand, within ninE at 572.195 kb on - strand, within ninE at 572.214 kb on - strand, within ninE at 572.343 kb on - strand, within ybcO
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.1 mg/ml remove 569,954 - -2.4 569,991 - +2.2 569,991 - +2.2 570,177 - ybcL b0545 0.11 +1.0 570,182 - ybcL b0545 0.12 +0.7 570,217 + ybcL b0545 0.18 -2.1 570,217 - ybcL b0545 0.18 +1.0 570,225 - ybcL b0545 0.20 -0.7 570,235 - ybcL b0545 0.22 +1.2 570,236 - ybcL b0545 0.22 -1.6 570,259 + ybcL b0545 0.26 -0.9 570,265 - ybcL b0545 0.27 -0.8 570,267 - ybcL b0545 0.27 -2.2 570,273 - ybcL b0545 0.28 -1.3 570,276 + ybcL b0545 0.29 -3.2 570,283 - ybcL b0545 0.30 -1.1 570,289 - ybcL b0545 0.31 -1.6 570,289 - +1.2 570,293 + ybcL b0545 0.32 -1.1 570,295 + ybcL b0545 0.32 +0.2 570,296 + ybcL b0545 0.33 +1.7 570,302 - ybcL b0545 0.34 +2.2 570,302 - ybcL b0545 0.34 -1.6 570,305 + ybcL b0545 0.34 +1.2 570,305 + ybcL b0545 0.34 +1.5 570,312 + ybcL b0545 0.36 +0.8 570,323 + ybcL b0545 0.38 +0.2 570,323 + ybcL b0545 0.38 -0.4 570,332 - ybcL b0545 0.39 -0.4 570,342 + ybcL b0545 0.41 -0.8 570,343 + ybcL b0545 0.41 +0.8 570,343 + ybcL b0545 0.41 +1.1 570,344 + ybcL b0545 0.41 +1.8 570,350 - ybcL b0545 0.42 -0.8 570,351 - ybcL b0545 0.43 -0.4 570,354 - ybcL b0545 0.43 -0.4 570,356 + ybcL b0545 0.43 -0.4 570,364 + ybcL b0545 0.45 -0.8 570,364 + ybcL b0545 0.45 -0.8 570,372 - ybcL b0545 0.46 -0.9 570,374 + ybcL b0545 0.47 -1.9 570,374 + ybcL b0545 0.47 -1.9 570,382 - ybcL b0545 0.48 -1.1 570,401 + ybcL b0545 0.52 -0.4 570,401 + ybcL b0545 0.52 +0.2 570,409 + ybcL b0545 0.53 -0.4 570,418 + ybcL b0545 0.55 -0.1 570,440 + ybcL b0545 0.59 +2.5 570,445 + ybcL b0545 0.60 -0.4 570,450 + ybcL b0545 0.61 -0.5 570,455 + ybcL b0545 0.61 +3.7 570,455 + ybcL b0545 0.61 -1.6 570,455 + ybcL b0545 0.61 -1.1 570,458 - ybcL b0545 0.62 -1.3 570,480 + ybcL b0545 0.66 -0.7 570,482 + ybcL b0545 0.66 +0.2 570,488 - ybcL b0545 0.67 -2.5 570,496 + ybcL b0545 0.69 -2.7 570,496 + ybcL b0545 0.69 +1.0 570,501 + ybcL b0545 0.70 -0.1 570,501 + ybcL b0545 0.70 -1.1 570,505 + ybcL b0545 0.70 -0.6 570,514 + ybcL b0545 0.72 -0.5 570,535 + ybcL b0545 0.76 -1.9 570,535 + ybcL b0545 0.76 +0.9 570,535 + ybcL b0545 0.76 +0.2 570,535 + ybcL b0545 0.76 +1.4 570,535 + ybcL b0545 0.76 +0.2 570,535 + ybcL b0545 0.76 -1.1 570,566 + ybcL b0545 0.82 +0.2 570,576 + ybcL b0545 0.83 -1.6 570,581 + ybcL b0545 0.84 -0.7 570,625 + +1.3 570,644 + +0.6 570,650 + -0.8 570,650 + -0.3 570,661 + -0.4 570,665 - -2.5 570,668 + -2.1 570,668 + +0.1 570,672 + -2.2 570,675 - -1.6 570,675 - -2.6 570,675 - -0.8 570,682 + -0.8 570,682 + -2.1 570,688 + +0.4 570,688 + +2.5 570,697 - +0.3 570,772 + ybcM b0546 0.12 -1.4 570,772 + ybcM b0546 0.12 +0.5 570,804 + ybcM b0546 0.16 -0.8 570,804 + ybcM b0546 0.16 -1.4 570,804 + ybcM b0546 0.16 -1.4 570,804 + ybcM b0546 0.16 -0.8 570,804 + ybcM b0546 0.16 -0.4 570,817 + ybcM b0546 0.18 -0.8 570,992 + ybcM b0546 0.39 -0.6 570,992 + ybcM b0546 0.39 +3.6 571,055 + ybcM b0546 0.47 -0.7 571,084 - ybcM b0546 0.51 -2.4 571,094 - ybcM b0546 0.52 -2.5 571,105 + ybcM b0546 0.54 -0.6 571,115 + ybcM b0546 0.55 -1.8 571,124 - ybcM b0546 0.56 +2.0 571,130 - ybcM b0546 0.57 -0.9 571,170 - ybcM b0546 0.62 +0.8 571,186 + ybcM b0546 0.64 -0.2 571,207 + ybcM b0546 0.66 +0.2 571,207 + ybcM b0546 0.66 -1.1 571,215 - ybcM b0546 0.67 -1.5 571,226 + ybcM b0546 0.69 -0.2 571,283 + ybcM b0546 0.76 -1.4 571,301 + ybcM b0546 0.78 +0.5 571,301 + ybcM b0546 0.78 +1.8 571,306 + ybcM b0546 0.79 +1.0 571,340 + ybcM b0546 0.83 -1.9 571,340 + ybcM b0546 0.83 -1.8 571,340 + ybcM b0546 0.83 -0.0 571,341 - ybcM b0546 0.83 -0.4 571,345 - ybcM b0546 0.84 +0.3 571,418 + -0.9 571,427 + -1.8 571,477 - -0.8 571,486 - +0.2 571,546 - +0.1 571,560 - -1.7 571,575 - +0.2 571,575 - +2.2 571,585 - -1.1 571,596 + +0.1 571,596 - -0.6 571,596 - +1.6 571,602 - ylcH b4588 0.11 -1.4 571,618 + ylcH b4588 0.26 +0.6 571,623 - ylcH b4588 0.31 +0.7 571,629 + ylcH b4588 0.37 -0.5 571,638 - ylcH b4588 0.46 -2.1 571,671 + ylcH b4588 0.78 +0.7 571,681 + ylcH b4588 0.88 +0.5 571,681 + ylcH b4588 0.88 -1.1 571,682 - +0.0 571,682 - +0.0 571,682 - +1.2 571,682 - +1.2 571,682 - -1.9 571,682 - -0.3 571,682 - +0.2 571,687 + -0.2 571,694 - +0.2 571,695 - -1.1 571,752 + ybcN b0547 0.14 +2.4 571,752 + ybcN b0547 0.14 +0.2 571,909 + ybcN b0547 0.48 +0.9 571,931 + ybcN b0547 0.53 -1.8 571,937 - ybcN b0547 0.54 -0.9 571,939 - ybcN b0547 0.55 -1.4 571,939 - ybcN b0547 0.55 -0.4 572,055 + ybcN b0547 0.80 -1.2 572,068 - ybcN b0547 0.83 +2.4 572,179 + ninE b0548 0.20 -1.6 572,179 + ninE b0548 0.20 -1.4 572,179 + ninE b0548 0.20 -0.8 572,195 - ninE b0548 0.30 +1.4 572,214 - ninE b0548 0.41 +1.3 572,343 - ybcO b0549 0.12 +0.5
Or see this region's nucleotide sequence