Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF881 and GFF882 overlap by 4 nucleotides GFF882 and GFF883 are separated by 233 nucleotides GFF883 and GFF884 are separated by 50 nucleotides
GFF881 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-), at 60,020 to 61,399
GFF881
GFF882 - FIG01048950: hypothetical protein, at 61,396 to 61,656
GFF882
GFF883 - Predicted transcriptional regulator of the myo-inositol catabolic operon, at 61,890 to 62,723
GFF883
GFF884 - Major myo-inositol transporter IolT, at 62,774 to 64,207
GFF884
Position (kb) 61
62
63 Strain fitness (log2 ratio) -2
-1
0
1 at 60.999 kb on - strand, within GFF881 at 61.106 kb on - strand, within GFF881 at 61.126 kb on - strand, within GFF881 at 61.230 kb on + strand, within GFF881 at 61.261 kb on + strand, within GFF881 at 61.395 kb on - strand at 61.395 kb on - strand at 61.439 kb on - strand, within GFF882 at 61.534 kb on + strand, within GFF882 at 61.563 kb on - strand, within GFF882 at 61.566 kb on - strand, within GFF882 at 61.570 kb on + strand, within GFF882 at 61.646 kb on - strand at 61.646 kb on - strand at 61.711 kb on - strand at 61.794 kb on - strand at 61.849 kb on - strand at 61.895 kb on + strand at 61.983 kb on + strand, within GFF883 at 62.000 kb on + strand, within GFF883 at 62.000 kb on + strand, within GFF883 at 62.001 kb on - strand, within GFF883 at 62.003 kb on + strand, within GFF883 at 62.004 kb on - strand, within GFF883 at 62.023 kb on + strand, within GFF883 at 62.103 kb on - strand, within GFF883 at 62.154 kb on + strand, within GFF883 at 62.263 kb on + strand, within GFF883 at 62.343 kb on + strand, within GFF883 at 62.383 kb on - strand, within GFF883 at 62.461 kb on + strand, within GFF883 at 62.465 kb on + strand, within GFF883 at 62.465 kb on + strand, within GFF883 at 62.511 kb on + strand, within GFF883 at 62.533 kb on + strand, within GFF883 at 62.835 kb on - strand at 62.881 kb on - strand at 63.003 kb on - strand, within GFF884 at 63.022 kb on + strand, within GFF884 at 63.082 kb on + strand, within GFF884 at 63.174 kb on + strand, within GFF884 at 63.373 kb on - strand, within GFF884 at 63.373 kb on - strand, within GFF884 at 63.373 kb on - strand, within GFF884 at 63.373 kb on - strand, within GFF884 at 63.373 kb on - strand, within GFF884 at 63.395 kb on + strand, within GFF884 at 63.396 kb on - strand, within GFF884 at 63.396 kb on - strand, within GFF884 at 63.396 kb on - strand, within GFF884 at 63.482 kb on + strand, within GFF884 at 63.483 kb on - strand, within GFF884 at 63.630 kb on - strand, within GFF884 at 63.655 kb on + strand, within GFF884 at 63.673 kb on + strand, within GFF884 at 63.673 kb on + strand, within GFF884 at 63.674 kb on - strand, within GFF884 at 63.674 kb on - strand, within GFF884 at 63.675 kb on + strand, within GFF884
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 60,999 - GFF881 0.71 -0.4 61,106 - GFF881 0.79 -0.3 61,126 - GFF881 0.80 +0.5 61,230 + GFF881 0.88 -1.4 61,261 + GFF881 0.90 -2.6 61,395 - -0.3 61,395 - -0.1 61,439 - GFF882 0.16 +0.2 61,534 + GFF882 0.53 +0.3 61,563 - GFF882 0.64 +0.2 61,566 - GFF882 0.65 +0.0 61,570 + GFF882 0.67 -0.3 61,646 - +0.4 61,646 - -0.2 61,711 - -0.0 61,794 - -0.3 61,849 - -0.7 61,895 + -0.4 61,983 + GFF883 0.11 -0.4 62,000 + GFF883 0.13 -0.6 62,000 + GFF883 0.13 -1.3 62,001 - GFF883 0.13 -1.5 62,003 + GFF883 0.14 -1.0 62,004 - GFF883 0.14 -1.6 62,023 + GFF883 0.16 +0.0 62,103 - GFF883 0.26 -1.4 62,154 + GFF883 0.32 -0.8 62,263 + GFF883 0.45 -0.8 62,343 + GFF883 0.54 -0.8 62,383 - GFF883 0.59 -1.2 62,461 + GFF883 0.68 -1.5 62,465 + GFF883 0.69 -1.4 62,465 + GFF883 0.69 -1.5 62,511 + GFF883 0.74 -0.9 62,533 + GFF883 0.77 -0.9 62,835 - +0.1 62,881 - -0.5 63,003 - GFF884 0.16 +0.4 63,022 + GFF884 0.17 +0.3 63,082 + GFF884 0.21 -0.1 63,174 + GFF884 0.28 +0.1 63,373 - GFF884 0.42 -0.6 63,373 - GFF884 0.42 -1.3 63,373 - GFF884 0.42 -0.1 63,373 - GFF884 0.42 +0.2 63,373 - GFF884 0.42 -0.0 63,395 + GFF884 0.43 +0.0 63,396 - GFF884 0.43 +0.6 63,396 - GFF884 0.43 -0.1 63,396 - GFF884 0.43 +0.0 63,482 + GFF884 0.49 +0.3 63,483 - GFF884 0.49 +0.1 63,630 - GFF884 0.60 +0.2 63,655 + GFF884 0.61 -0.2 63,673 + GFF884 0.63 +0.1 63,673 + GFF884 0.63 +0.2 63,674 - GFF884 0.63 -0.3 63,674 - GFF884 0.63 -0.1 63,675 + GFF884 0.63 +0.8
Or see this region's nucleotide sequence