Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF522

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF520 and GFF521 are separated by 441 nucleotidesGFF521 and GFF522 are separated by 139 nucleotidesGFF522 and GFF523 are separated by 230 nucleotides GFF520 - Universal stress protein A, at 251,789 to 252,223 GFF520 GFF521 - Universal stress protein B, at 252,665 to 252,946 GFF521 GFF522 - Low-affinity inorganic phosphate transporter, at 253,086 to 254,582 GFF522 GFF523 - NAD(FAD)-utilizing dehydrogenases, at 254,813 to 256,009 GFF523 Position (kb) 253 254 255Strain fitness (log2 ratio) -3 -2 -1 0 1at 252.217 kb on - strandat 252.240 kb on + strandat 252.241 kb on - strandat 252.241 kb on - strandat 252.322 kb on - strandat 252.343 kb on + strandat 252.343 kb on + strandat 252.343 kb on + strandat 252.344 kb on - strandat 252.349 kb on + strandat 252.349 kb on + strandat 252.350 kb on - strandat 252.402 kb on - strandat 252.508 kb on + strandat 252.523 kb on + strandat 252.523 kb on + strandat 252.526 kb on + strandat 252.527 kb on - strandat 252.610 kb on + strandat 252.611 kb on - strandat 252.615 kb on + strandat 252.630 kb on + strandat 252.642 kb on + strandat 252.642 kb on + strandat 252.642 kb on + strandat 252.664 kb on + strandat 252.674 kb on + strandat 252.674 kb on + strandat 252.731 kb on + strand, within GFF521at 252.732 kb on - strand, within GFF521at 252.737 kb on + strand, within GFF521at 252.737 kb on + strand, within GFF521at 252.798 kb on + strand, within GFF521at 252.799 kb on - strand, within GFF521at 252.803 kb on + strand, within GFF521at 252.803 kb on + strand, within GFF521at 252.803 kb on + strand, within GFF521at 252.803 kb on + strand, within GFF521at 252.803 kb on + strand, within GFF521at 252.804 kb on - strand, within GFF521at 252.804 kb on - strand, within GFF521at 252.804 kb on - strand, within GFF521at 252.805 kb on + strand, within GFF521at 252.805 kb on + strand, within GFF521at 252.809 kb on + strand, within GFF521at 252.810 kb on - strand, within GFF521at 252.982 kb on - strandat 252.985 kb on - strandat 252.988 kb on + strandat 253.011 kb on - strandat 253.148 kb on + strandat 253.148 kb on + strandat 253.239 kb on + strand, within GFF522at 253.240 kb on - strand, within GFF522at 253.240 kb on - strand, within GFF522at 253.240 kb on - strand, within GFF522at 253.286 kb on + strand, within GFF522at 253.361 kb on + strand, within GFF522at 253.425 kb on - strand, within GFF522at 253.444 kb on + strand, within GFF522at 253.463 kb on + strand, within GFF522at 253.574 kb on + strand, within GFF522at 253.591 kb on - strand, within GFF522at 253.591 kb on - strand, within GFF522at 253.591 kb on - strand, within GFF522at 254.031 kb on - strand, within GFF522at 254.348 kb on + strand, within GFF522at 254.349 kb on - strand, within GFF522at 254.349 kb on - strand, within GFF522at 254.363 kb on - strand, within GFF522at 254.452 kb on + strandat 254.538 kb on + strandat 254.538 kb on + strandat 254.553 kb on + strandat 254.577 kb on + strandat 254.577 kb on + strandat 254.837 kb on - strandat 254.838 kb on + strandat 254.838 kb on + strandat 254.996 kb on + strand, within GFF523at 254.997 kb on - strand, within GFF523at 255.043 kb on + strand, within GFF523at 255.149 kb on - strand, within GFF523at 255.237 kb on + strand, within GFF523at 255.394 kb on + strand, within GFF523at 255.395 kb on - strand, within GFF523at 255.400 kb on - strand, within GFF523at 255.404 kb on - strand, within GFF523at 255.414 kb on + strand, within GFF523at 255.549 kb on - strand, within GFF523at 255.567 kb on + strand, within GFF523at 255.567 kb on + strand, within GFF523at 255.582 kb on + strand, within GFF523

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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252,217 - -0.6
252,240 + +0.2
252,241 - +0.1
252,241 - -0.0
252,322 - +1.1
252,343 + +0.3
252,343 + -0.5
252,343 + -0.1
252,344 - -0.1
252,349 + +0.2
252,349 + -1.2
252,350 - -0.3
252,402 - -0.0
252,508 + +0.6
252,523 + +0.4
252,523 + -0.1
252,526 + +1.3
252,527 - +0.7
252,610 + +0.2
252,611 - +0.2
252,615 + +0.3
252,630 + -0.2
252,642 + +0.6
252,642 + +0.2
252,642 + +0.3
252,664 + -0.0
252,674 + -0.5
252,674 + +0.7
252,731 + GFF521 0.23 +0.2
252,732 - GFF521 0.24 -1.1
252,737 + GFF521 0.26 +0.9
252,737 + GFF521 0.26 +0.3
252,798 + GFF521 0.47 +0.7
252,799 - GFF521 0.48 +0.1
252,803 + GFF521 0.49 -0.1
252,803 + GFF521 0.49 +0.4
252,803 + GFF521 0.49 +0.4
252,803 + GFF521 0.49 -0.2
252,803 + GFF521 0.49 +0.8
252,804 - GFF521 0.49 +0.3
252,804 - GFF521 0.49 +0.8
252,804 - GFF521 0.49 -0.1
252,805 + GFF521 0.50 +0.4
252,805 + GFF521 0.50 +0.7
252,809 + GFF521 0.51 -0.1
252,810 - GFF521 0.51 +1.2
252,982 - +0.1
252,985 - +0.1
252,988 + +0.2
253,011 - -0.2
253,148 + -1.3
253,148 + +0.5
253,239 + GFF522 0.10 -0.5
253,240 - GFF522 0.10 +0.0
253,240 - GFF522 0.10 +0.1
253,240 - GFF522 0.10 -0.2
253,286 + GFF522 0.13 -3.3
253,361 + GFF522 0.18 +0.0
253,425 - GFF522 0.23 -0.7
253,444 + GFF522 0.24 -0.3
253,463 + GFF522 0.25 -0.1
253,574 + GFF522 0.33 +0.4
253,591 - GFF522 0.34 -0.3
253,591 - GFF522 0.34 -0.5
253,591 - GFF522 0.34 -0.8
254,031 - GFF522 0.63 -0.3
254,348 + GFF522 0.84 -0.7
254,349 - GFF522 0.84 -0.7
254,349 - GFF522 0.84 -1.1
254,363 - GFF522 0.85 -1.2
254,452 + -0.7
254,538 + -0.6
254,538 + -0.8
254,553 + -0.9
254,577 + -0.9
254,577 + -1.6
254,837 - +0.5
254,838 + +0.8
254,838 + +0.9
254,996 + GFF523 0.15 +1.1
254,997 - GFF523 0.15 +0.7
255,043 + GFF523 0.19 +0.5
255,149 - GFF523 0.28 -0.6
255,237 + GFF523 0.35 +0.2
255,394 + GFF523 0.49 +0.1
255,395 - GFF523 0.49 -0.6
255,400 - GFF523 0.49 +0.4
255,404 - GFF523 0.49 +0.5
255,414 + GFF523 0.50 +0.5
255,549 - GFF523 0.61 +0.4
255,567 + GFF523 0.63 +0.4
255,567 + GFF523 0.63 +0.4
255,582 + GFF523 0.64 +0.0

Or see this region's nucleotide sequence