Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4653 and GFF4654 are separated by 120 nucleotides GFF4654 and GFF4655 are separated by 34 nucleotides GFF4655 and GFF4656 are separated by 9 nucleotides
GFF4653 - TolA protein, at 445,161 to 446,519
GFF4653
GFF4654 - tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins, at 446,640 to 447,935
GFF4654
GFF4655 - 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor, at 447,970 to 448,494
GFF4655
GFF4656 - TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain, at 448,504 to 449,292
GFF4656
Position (kb) 446
447
448 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 446.261 kb on + strand, within GFF4653 at 446.351 kb on + strand, within GFF4653 at 446.354 kb on + strand, within GFF4653 at 446.378 kb on - strand, within GFF4653 at 446.518 kb on - strand at 446.540 kb on + strand at 446.557 kb on + strand at 446.639 kb on + strand at 447.026 kb on - strand, within GFF4654 at 447.147 kb on + strand, within GFF4654 at 447.148 kb on - strand, within GFF4654 at 447.211 kb on - strand, within GFF4654 at 447.289 kb on - strand, within GFF4654 at 447.453 kb on + strand, within GFF4654 at 447.454 kb on - strand, within GFF4654 at 447.554 kb on + strand, within GFF4654 at 447.554 kb on + strand, within GFF4654 at 447.623 kb on + strand, within GFF4654 at 447.623 kb on + strand, within GFF4654 at 447.671 kb on + strand, within GFF4654 at 447.794 kb on + strand, within GFF4654 at 447.814 kb on - strand at 447.814 kb on - strand at 448.102 kb on - strand, within GFF4655 at 448.205 kb on - strand, within GFF4655 at 448.248 kb on + strand, within GFF4655 at 448.249 kb on - strand, within GFF4655 at 448.260 kb on + strand, within GFF4655 at 448.489 kb on + strand at 448.785 kb on + strand, within GFF4656 at 448.809 kb on + strand, within GFF4656
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 446,261 + GFF4653 0.81 -1.8 446,351 + GFF4653 0.88 -0.5 446,354 + GFF4653 0.88 -3.3 446,378 - GFF4653 0.90 -1.2 446,518 - +0.0 446,540 + -0.2 446,557 + +0.2 446,639 + +0.2 447,026 - GFF4654 0.30 -0.1 447,147 + GFF4654 0.39 -2.1 447,148 - GFF4654 0.39 -0.9 447,211 - GFF4654 0.44 -3.1 447,289 - GFF4654 0.50 -1.2 447,453 + GFF4654 0.63 +0.3 447,454 - GFF4654 0.63 -2.1 447,554 + GFF4654 0.71 -0.6 447,554 + GFF4654 0.71 -0.7 447,623 + GFF4654 0.76 -1.4 447,623 + GFF4654 0.76 -0.7 447,671 + GFF4654 0.80 -1.6 447,794 + GFF4654 0.89 -0.7 447,814 - +1.3 447,814 - -2.5 448,102 - GFF4655 0.25 -1.1 448,205 - GFF4655 0.45 -0.7 448,248 + GFF4655 0.53 -0.7 448,249 - GFF4655 0.53 -1.3 448,260 + GFF4655 0.55 -0.1 448,489 + +0.5 448,785 + GFF4656 0.36 -0.5 448,809 + GFF4656 0.39 -0.5
Or see this region's nucleotide sequence