Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4388 and GFF4389 are separated by 45 nucleotides GFF4389 and GFF4390 overlap by 1 nucleotides GFF4390 and GFF4391 are separated by 110 nucleotides
GFF4388 - DNA polymerase III subunits gamma and tau (EC 2.7.7.7), at 171,121 to 173,049
GFF4388
GFF4389 - FIG000557: hypothetical protein co-occurring with RecR, at 173,095 to 173,424
GFF4389
GFF4390 - Recombination protein RecR, at 173,424 to 174,029
GFF4390
GFF4391 - Chaperone protein HtpG, at 174,140 to 176,014
GFF4391
Position (kb) 173
174
175 Strain fitness (log2 ratio) -1
0
1 at 173.094 kb on + strand at 173.094 kb on + strand at 173.094 kb on + strand at 173.453 kb on + strand at 173.630 kb on + strand, within GFF4390 at 173.633 kb on + strand, within GFF4390 at 173.700 kb on + strand, within GFF4390 at 173.700 kb on + strand, within GFF4390 at 173.701 kb on - strand, within GFF4390 at 173.890 kb on - strand, within GFF4390 at 173.890 kb on - strand, within GFF4390 at 173.890 kb on - strand, within GFF4390 at 174.134 kb on - strand at 174.355 kb on + strand, within GFF4391 at 174.355 kb on + strand, within GFF4391 at 174.361 kb on + strand, within GFF4391 at 174.362 kb on - strand, within GFF4391 at 174.555 kb on + strand, within GFF4391 at 174.555 kb on + strand, within GFF4391 at 174.556 kb on - strand, within GFF4391 at 174.560 kb on - strand, within GFF4391 at 174.623 kb on + strand, within GFF4391 at 174.672 kb on + strand, within GFF4391 at 174.672 kb on + strand, within GFF4391 at 174.673 kb on - strand, within GFF4391 at 174.673 kb on - strand, within GFF4391 at 174.673 kb on - strand, within GFF4391 at 174.673 kb on - strand, within GFF4391 at 174.875 kb on + strand, within GFF4391 at 174.949 kb on + strand, within GFF4391 at 174.960 kb on - strand, within GFF4391 at 174.974 kb on + strand, within GFF4391 at 174.974 kb on + strand, within GFF4391 at 174.975 kb on - strand, within GFF4391
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 173,094 + +0.3 173,094 + +0.1 173,094 + -0.3 173,453 + -0.7 173,630 + GFF4390 0.34 -1.0 173,633 + GFF4390 0.34 +1.3 173,700 + GFF4390 0.46 -0.2 173,700 + GFF4390 0.46 -0.5 173,701 - GFF4390 0.46 -0.9 173,890 - GFF4390 0.77 -0.6 173,890 - GFF4390 0.77 -1.1 173,890 - GFF4390 0.77 -0.9 174,134 - +0.5 174,355 + GFF4391 0.11 +0.3 174,355 + GFF4391 0.11 +0.6 174,361 + GFF4391 0.12 -0.0 174,362 - GFF4391 0.12 -0.3 174,555 + GFF4391 0.22 +0.1 174,555 + GFF4391 0.22 -0.0 174,556 - GFF4391 0.22 +1.0 174,560 - GFF4391 0.22 -0.0 174,623 + GFF4391 0.26 +0.1 174,672 + GFF4391 0.28 +0.5 174,672 + GFF4391 0.28 -0.0 174,673 - GFF4391 0.28 -0.4 174,673 - GFF4391 0.28 -1.6 174,673 - GFF4391 0.28 +0.3 174,673 - GFF4391 0.28 +0.5 174,875 + GFF4391 0.39 +0.5 174,949 + GFF4391 0.43 +0.8 174,960 - GFF4391 0.44 +1.1 174,974 + GFF4391 0.44 +0.9 174,974 + GFF4391 0.44 -0.1 174,975 - GFF4391 0.45 +1.7
Or see this region's nucleotide sequence