Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4243

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4241 and GFF4242 are separated by 143 nucleotidesGFF4242 and GFF4243 are separated by 55 nucleotidesGFF4243 and GFF4244 are separated by 147 nucleotidesGFF4244 and GFF4245 are separated by 69 nucleotides GFF4241 - Attachment invasion locus protein precursor, at 20,600 to 21,124 GFF4241 GFF4242 - Possible transcriptionl regulator, at 21,268 to 21,909 GFF4242 GFF4243 - Probable secreted protein, at 21,965 to 22,144 GFF4243 GFF4244 - Putative outer membrane lipoprotein, at 22,292 to 22,561 GFF4244 GFF4245 - RND efflux system, outer membrane lipoprotein CmeC, at 22,631 to 24,088 GFF4245 Position (kb) 21 22 23Strain fitness (log2 ratio) -1 0 1at 21.200 kb on - strandat 21.806 kb on - strand, within GFF4242at 21.859 kb on - strandat 21.984 kb on + strand, within GFF4243at 22.269 kb on - strandat 22.323 kb on - strand, within GFF4244at 22.576 kb on + strandat 22.579 kb on + strandat 22.579 kb on + strandat 22.579 kb on + strandat 22.580 kb on - strandat 22.580 kb on - strandat 22.582 kb on - strandat 22.624 kb on - strandat 22.691 kb on - strandat 22.746 kb on + strandat 22.754 kb on - strandat 22.774 kb on + strandat 22.780 kb on - strand, within GFF4245at 22.879 kb on + strand, within GFF4245at 22.928 kb on - strand, within GFF4245at 22.991 kb on + strand, within GFF4245at 23.072 kb on - strand, within GFF4245

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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21,200 - -0.2
21,806 - GFF4242 0.84 +1.1
21,859 - -0.5
21,984 + GFF4243 0.11 -1.7
22,269 - +0.3
22,323 - GFF4244 0.11 +0.5
22,576 + -0.3
22,579 + +0.4
22,579 + -0.8
22,579 + -0.2
22,580 - +0.0
22,580 - +0.5
22,582 - +0.3
22,624 - +0.4
22,691 - -0.2
22,746 + -0.6
22,754 - +0.9
22,774 + +0.3
22,780 - GFF4245 0.10 -0.1
22,879 + GFF4245 0.17 +0.4
22,928 - GFF4245 0.20 -0.8
22,991 + GFF4245 0.25 +0.2
23,072 - GFF4245 0.30 +0.2

Or see this region's nucleotide sequence