Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF391 and GFF392 are separated by 2 nucleotides GFF392 and GFF393 are separated by 202 nucleotides
GFF391 - ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-), at 105,781 to 106,827
GFF391
GFF392 - ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20), at 106,830 to 107,762
GFF392
GFF393 - 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29), at 107,965 to 109,161
GFF393
Position (kb)
106
107
108 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 105.927 kb on + strand, within GFF391 at 105.957 kb on + strand, within GFF391 at 106.223 kb on + strand, within GFF391 at 106.686 kb on + strand, within GFF391 at 106.832 kb on - strand at 106.832 kb on - strand at 106.832 kb on - strand at 106.887 kb on - strand at 106.992 kb on - strand, within GFF392 at 107.126 kb on - strand, within GFF392 at 107.252 kb on - strand, within GFF392 at 107.404 kb on + strand, within GFF392 at 107.426 kb on - strand, within GFF392 at 107.482 kb on + strand, within GFF392 at 107.583 kb on - strand, within GFF392 at 107.781 kb on - strand at 107.822 kb on - strand at 107.827 kb on + strand at 107.869 kb on + strand at 107.930 kb on + strand at 107.931 kb on - strand at 108.048 kb on + strand at 108.096 kb on + strand, within GFF393 at 108.115 kb on - strand, within GFF393 at 108.118 kb on + strand, within GFF393 at 108.118 kb on + strand, within GFF393 at 108.118 kb on + strand, within GFF393 at 108.118 kb on + strand, within GFF393 at 108.151 kb on - strand, within GFF393 at 108.286 kb on + strand, within GFF393 at 108.349 kb on - strand, within GFF393 at 108.378 kb on + strand, within GFF393 at 108.378 kb on - strand, within GFF393 at 108.379 kb on - strand, within GFF393 at 108.422 kb on - strand, within GFF393 at 108.668 kb on + strand, within GFF393 at 108.668 kb on + strand, within GFF393 at 108.669 kb on - strand, within GFF393 at 108.672 kb on + strand, within GFF393 at 108.673 kb on - strand, within GFF393 at 108.673 kb on - strand, within GFF393 at 108.676 kb on - strand, within GFF393
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 105,927 + GFF391 0.14 -0.8 105,957 + GFF391 0.17 -0.1 106,223 + GFF391 0.42 -2.8 106,686 + GFF391 0.86 -0.0 106,832 - -0.4 106,832 - -0.6 106,832 - -0.5 106,887 - -1.1 106,992 - GFF392 0.17 -1.9 107,126 - GFF392 0.32 -0.8 107,252 - GFF392 0.45 +0.2 107,404 + GFF392 0.62 -0.2 107,426 - GFF392 0.64 -0.8 107,482 + GFF392 0.70 -1.1 107,583 - GFF392 0.81 -1.8 107,781 - -0.0 107,822 - +0.5 107,827 + -0.3 107,869 + +0.4 107,930 + +0.4 107,931 - -0.2 108,048 + -0.4 108,096 + GFF393 0.11 -1.0 108,115 - GFF393 0.13 +0.2 108,118 + GFF393 0.13 +0.0 108,118 + GFF393 0.13 -0.1 108,118 + GFF393 0.13 +0.0 108,118 + GFF393 0.13 -0.1 108,151 - GFF393 0.16 +0.3 108,286 + GFF393 0.27 -0.4 108,349 - GFF393 0.32 +0.1 108,378 + GFF393 0.35 -0.0 108,378 - GFF393 0.35 +0.4 108,379 - GFF393 0.35 -0.6 108,422 - GFF393 0.38 +1.1 108,668 + GFF393 0.59 +0.3 108,668 + GFF393 0.59 -0.7 108,669 - GFF393 0.59 -0.1 108,672 + GFF393 0.59 -0.1 108,673 - GFF393 0.59 -0.5 108,673 - GFF393 0.59 -0.3 108,676 - GFF393 0.59 -0.5
Or see this region's nucleotide sequence