Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3737

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3735 and GFF3736 are separated by 90 nucleotidesGFF3736 and GFF3737 are separated by 79 nucleotidesGFF3737 and GFF3738 are separated by 411 nucleotides GFF3735 - Secreted effector protein, at 1,600 to 3,966 GFF3735 GFF3736 - Phage-related protein, at 4,057 to 4,287 GFF3736 GFF3737 - Phage antitermination protein Q, at 4,367 to 5,284 GFF3737 GFF3738 - FIG01045701: hypothetical protein, at 5,696 to 7,027 GFF3738 Position (kb) 4 5 6Strain fitness (log2 ratio) -1 0 1at 3.380 kb on + strand, within GFF3735at 3.381 kb on - strand, within GFF3735at 3.394 kb on - strand, within GFF3735at 3.689 kb on + strand, within GFF3735at 3.938 kb on - strandat 4.086 kb on - strand, within GFF3736at 4.341 kb on + strandat 4.341 kb on + strandat 4.657 kb on + strand, within GFF3737at 4.933 kb on - strand, within GFF3737at 5.033 kb on + strand, within GFF3737at 5.216 kb on + strandat 5.372 kb on - strandat 5.380 kb on - strandat 5.410 kb on + strandat 5.454 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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3,380 + GFF3735 0.75 -0.0
3,381 - GFF3735 0.75 +0.4
3,394 - GFF3735 0.76 +0.8
3,689 + GFF3735 0.88 +0.9
3,938 - +0.1
4,086 - GFF3736 0.13 -0.3
4,341 + +0.1
4,341 + +0.7
4,657 + GFF3737 0.32 +0.1
4,933 - GFF3737 0.62 -1.2
5,033 + GFF3737 0.73 -1.4
5,216 + -0.1
5,372 - +0.1
5,380 - -0.0
5,410 + -0.0
5,454 - -0.3

Or see this region's nucleotide sequence