Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3694 and GFF3695 are separated by 77 nucleotides GFF3695 and GFF3696 are separated by 194 nucleotides
GFF3694 - Putative ion:amino acid symporter, at 46,917 to 48,353
GFF3694
GFF3695 - Nicotinate phosphoribosyltransferase (EC 2.4.2.11), at 48,431 to 49,633
GFF3695
GFF3696 - Integrase, at 49,828 to 51,168
GFF3696
Position (kb) 48
49
50 Strain fitness (log2 ratio) -1
0
1 at 47.670 kb on + strand, within GFF3694 at 47.784 kb on - strand, within GFF3694 at 47.797 kb on + strand, within GFF3694 at 47.804 kb on + strand, within GFF3694 at 47.804 kb on + strand, within GFF3694 at 47.858 kb on - strand, within GFF3694 at 47.902 kb on + strand, within GFF3694 at 48.311 kb on + strand at 48.373 kb on + strand at 48.432 kb on + strand at 48.443 kb on - strand at 48.443 kb on - strand at 48.565 kb on + strand, within GFF3695 at 48.853 kb on + strand, within GFF3695 at 48.853 kb on + strand, within GFF3695 at 49.071 kb on - strand, within GFF3695 at 49.178 kb on - strand, within GFF3695 at 49.277 kb on - strand, within GFF3695 at 49.277 kb on - strand, within GFF3695 at 49.310 kb on - strand, within GFF3695 at 49.310 kb on - strand, within GFF3695 at 49.355 kb on - strand, within GFF3695 at 49.485 kb on + strand, within GFF3695 at 49.486 kb on - strand, within GFF3695 at 49.486 kb on - strand, within GFF3695 at 49.542 kb on + strand at 49.543 kb on - strand at 49.581 kb on + strand at 49.633 kb on + strand at 49.633 kb on + strand at 49.703 kb on - strand at 50.024 kb on + strand, within GFF3696 at 50.024 kb on + strand, within GFF3696 at 50.025 kb on - strand, within GFF3696 at 50.029 kb on - strand, within GFF3696 at 50.288 kb on + strand, within GFF3696 at 50.288 kb on + strand, within GFF3696 at 50.290 kb on + strand, within GFF3696 at 50.290 kb on + strand, within GFF3696 at 50.291 kb on - strand, within GFF3696 at 50.304 kb on + strand, within GFF3696 at 50.389 kb on - strand, within GFF3696 at 50.436 kb on - strand, within GFF3696 at 50.436 kb on - strand, within GFF3696 at 50.627 kb on + strand, within GFF3696 at 50.627 kb on + strand, within GFF3696 at 50.628 kb on - strand, within GFF3696 at 50.628 kb on - strand, within GFF3696
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 47,670 + GFF3694 0.52 -0.0 47,784 - GFF3694 0.60 +0.0 47,797 + GFF3694 0.61 -0.6 47,804 + GFF3694 0.62 +1.0 47,804 + GFF3694 0.62 -0.1 47,858 - GFF3694 0.65 -0.2 47,902 + GFF3694 0.69 -0.1 48,311 + +0.1 48,373 + +0.2 48,432 + -0.7 48,443 - +0.1 48,443 - +0.4 48,565 + GFF3695 0.11 -0.3 48,853 + GFF3695 0.35 -0.6 48,853 + GFF3695 0.35 -1.0 49,071 - GFF3695 0.53 -0.1 49,178 - GFF3695 0.62 -0.4 49,277 - GFF3695 0.70 -0.2 49,277 - GFF3695 0.70 -0.5 49,310 - GFF3695 0.73 -0.4 49,310 - GFF3695 0.73 -0.4 49,355 - GFF3695 0.77 -0.4 49,485 + GFF3695 0.88 -0.1 49,486 - GFF3695 0.88 +0.5 49,486 - GFF3695 0.88 +0.3 49,542 + -0.2 49,543 - +0.2 49,581 + -0.7 49,633 + -0.1 49,633 + -0.8 49,703 - +0.3 50,024 + GFF3696 0.15 -0.1 50,024 + GFF3696 0.15 +0.0 50,025 - GFF3696 0.15 -0.0 50,029 - GFF3696 0.15 +0.7 50,288 + GFF3696 0.34 +0.0 50,288 + GFF3696 0.34 -1.4 50,290 + GFF3696 0.34 +0.2 50,290 + GFF3696 0.34 +0.0 50,291 - GFF3696 0.35 +1.6 50,304 + GFF3696 0.35 -0.4 50,389 - GFF3696 0.42 +0.3 50,436 - GFF3696 0.45 -0.0 50,436 - GFF3696 0.45 -0.0 50,627 + GFF3696 0.60 -0.3 50,627 + GFF3696 0.60 +1.1 50,628 - GFF3696 0.60 +0.5 50,628 - GFF3696 0.60 +1.1
Or see this region's nucleotide sequence