Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3517

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3516 and GFF3517 are separated by 321 nucleotidesGFF3517 and GFF3518 are separated by 48 nucleotides GFF3516 - 6-phosphofructokinase class II (EC 2.7.1.11), at 267,143 to 268,075 GFF3516 GFF3517 - Putative outer membrane protein, at 268,397 to 269,122 GFF3517 GFF3518 - putative outer membrane protein, at 269,171 to 270,130 GFF3518 Position (kb) 268 269 270Strain fitness (log2 ratio) -1 0 1at 267.440 kb on + strand, within GFF3516at 267.577 kb on + strand, within GFF3516at 267.670 kb on + strand, within GFF3516at 267.949 kb on + strand, within GFF3516at 267.949 kb on + strand, within GFF3516at 268.061 kb on - strandat 268.063 kb on - strandat 268.066 kb on + strandat 268.067 kb on - strandat 268.067 kb on - strandat 268.358 kb on - strandat 268.359 kb on + strandat 268.427 kb on + strandat 268.589 kb on - strand, within GFF3517at 268.702 kb on + strand, within GFF3517at 268.852 kb on + strand, within GFF3517at 268.853 kb on - strand, within GFF3517at 268.902 kb on - strand, within GFF3517at 268.927 kb on + strand, within GFF3517at 268.928 kb on - strand, within GFF3517at 268.974 kb on + strand, within GFF3517at 268.975 kb on - strand, within GFF3517at 269.040 kb on + strand, within GFF3517at 269.123 kb on + strandat 269.123 kb on + strandat 269.202 kb on + strandat 269.315 kb on - strand, within GFF3518at 270.008 kb on - strand, within GFF3518

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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267,440 + GFF3516 0.32 +0.2
267,577 + GFF3516 0.47 -0.2
267,670 + GFF3516 0.56 +0.5
267,949 + GFF3516 0.86 +0.0
267,949 + GFF3516 0.86 -0.0
268,061 - -0.6
268,063 - -0.0
268,066 + -0.3
268,067 - -0.3
268,067 - -0.5
268,358 - -0.0
268,359 + +0.4
268,427 + +0.1
268,589 - GFF3517 0.26 +0.6
268,702 + GFF3517 0.42 -0.2
268,852 + GFF3517 0.63 +0.2
268,853 - GFF3517 0.63 +0.2
268,902 - GFF3517 0.70 +1.1
268,927 + GFF3517 0.73 -0.3
268,928 - GFF3517 0.73 +0.6
268,974 + GFF3517 0.79 +0.3
268,975 - GFF3517 0.80 +0.1
269,040 + GFF3517 0.89 +0.3
269,123 + +0.0
269,123 + +0.2
269,202 + +0.3
269,315 - GFF3518 0.15 -0.5
270,008 - GFF3518 0.87 -0.8

Or see this region's nucleotide sequence