Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF341

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF340 and GFF341 are separated by 74 nucleotides GFF340 - autotransporter, at 55,450 to 58,317 GFF340 GFF341 - RmbA, at 58,392 to 59,009 GFF341 Position (kb) 58 59 60Strain fitness (log2 ratio) -1 0 1at 57.438 kb on + strand, within GFF340at 57.446 kb on + strand, within GFF340at 57.447 kb on - strand, within GFF340at 57.447 kb on - strand, within GFF340at 57.481 kb on - strand, within GFF340at 57.481 kb on - strand, within GFF340at 57.483 kb on + strand, within GFF340at 57.524 kb on + strand, within GFF340at 57.525 kb on - strand, within GFF340at 57.525 kb on - strand, within GFF340at 57.559 kb on - strand, within GFF340at 57.634 kb on - strand, within GFF340at 57.639 kb on + strand, within GFF340at 57.639 kb on + strand, within GFF340at 57.639 kb on + strand, within GFF340at 57.639 kb on + strand, within GFF340at 57.639 kb on + strand, within GFF340at 57.639 kb on + strand, within GFF340at 57.640 kb on - strand, within GFF340at 57.741 kb on - strand, within GFF340at 57.759 kb on - strand, within GFF340at 57.798 kb on + strand, within GFF340at 57.799 kb on - strand, within GFF340at 57.799 kb on - strand, within GFF340at 57.801 kb on - strand, within GFF340at 57.840 kb on - strand, within GFF340at 57.871 kb on + strand, within GFF340at 57.930 kb on + strand, within GFF340at 58.056 kb on + strandat 58.056 kb on + strandat 58.165 kb on - strandat 58.174 kb on + strandat 58.174 kb on + strandat 58.539 kb on + strand, within GFF341at 59.479 kb on - strandat 59.578 kb on - strandat 59.831 kb on + strandat 59.924 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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57,438 + GFF340 0.69 -0.7
57,446 + GFF340 0.70 +0.0
57,447 - GFF340 0.70 +0.3
57,447 - GFF340 0.70 -0.9
57,481 - GFF340 0.71 -0.1
57,481 - GFF340 0.71 +0.4
57,483 + GFF340 0.71 -0.4
57,524 + GFF340 0.72 +0.1
57,525 - GFF340 0.72 +1.5
57,525 - GFF340 0.72 +0.1
57,559 - GFF340 0.74 +0.2
57,634 - GFF340 0.76 -0.0
57,639 + GFF340 0.76 +0.3
57,639 + GFF340 0.76 +0.4
57,639 + GFF340 0.76 -0.6
57,639 + GFF340 0.76 +0.2
57,639 + GFF340 0.76 -0.7
57,639 + GFF340 0.76 +0.5
57,640 - GFF340 0.76 -0.2
57,741 - GFF340 0.80 -0.2
57,759 - GFF340 0.81 +0.2
57,798 + GFF340 0.82 -0.3
57,799 - GFF340 0.82 +0.4
57,799 - GFF340 0.82 -0.1
57,801 - GFF340 0.82 +0.1
57,840 - GFF340 0.83 +0.2
57,871 + GFF340 0.84 -0.0
57,930 + GFF340 0.86 -0.1
58,056 + +0.2
58,056 + -0.1
58,165 - +0.1
58,174 + -0.2
58,174 + +0.2
58,539 + GFF341 0.24 -0.7
59,479 - -0.7
59,578 - -0.4
59,831 + +0.1
59,924 + -0.0

Or see this region's nucleotide sequence