Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3132 and GFF3133 are separated by 44 nucleotides GFF3133 and GFF3134 are separated by 73 nucleotides
GFF3132 - TRAP-type C4-dicarboxylate transport system, large permease component, at 138,250 to 139,557
GFF3132
GFF3133 - Putative cell division protein precursor, at 139,602 to 141,014
GFF3133
GFF3134 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 141,088 to 141,825
GFF3134
Position (kb)
139
140
141
142 Strain fitness (log2 ratio)
-2
-1
0
1 at 138.648 kb on - strand, within GFF3132 at 138.851 kb on - strand, within GFF3132 at 138.868 kb on + strand, within GFF3132 at 138.945 kb on - strand, within GFF3132 at 139.016 kb on - strand, within GFF3132 at 139.101 kb on + strand, within GFF3132 at 139.748 kb on + strand, within GFF3133 at 139.890 kb on - strand, within GFF3133 at 139.890 kb on - strand, within GFF3133 at 140.112 kb on + strand, within GFF3133 at 140.113 kb on - strand, within GFF3133 at 140.486 kb on - strand, within GFF3133 at 140.554 kb on + strand, within GFF3133 at 140.744 kb on - strand, within GFF3133 at 140.744 kb on - strand, within GFF3133 at 140.744 kb on - strand, within GFF3133 at 141.015 kb on - strand at 141.015 kb on - strand at 141.016 kb on + strand at 141.017 kb on - strand at 141.017 kb on - strand at 141.017 kb on - strand at 141.017 kb on - strand at 141.017 kb on - strand at 141.027 kb on + strand at 141.028 kb on - strand at 141.080 kb on - strand at 141.097 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 138,648 - GFF3132 0.30 +0.1 138,851 - GFF3132 0.46 -0.4 138,868 + GFF3132 0.47 +0.2 138,945 - GFF3132 0.53 +0.2 139,016 - GFF3132 0.59 +0.2 139,101 + GFF3132 0.65 -0.2 139,748 + GFF3133 0.10 -1.9 139,890 - GFF3133 0.20 -0.6 139,890 - GFF3133 0.20 +0.2 140,112 + GFF3133 0.36 -1.2 140,113 - GFF3133 0.36 -0.3 140,486 - GFF3133 0.63 -0.4 140,554 + GFF3133 0.67 -0.1 140,744 - GFF3133 0.81 -0.7 140,744 - GFF3133 0.81 -0.7 140,744 - GFF3133 0.81 -0.9 141,015 - -0.2 141,015 - +0.3 141,016 + -0.4 141,017 - +0.2 141,017 - -0.7 141,017 - -0.5 141,017 - -0.1 141,017 - -0.2 141,027 + -1.0 141,028 - +0.2 141,080 - +0.3 141,097 - +0.1
Or see this region's nucleotide sequence