Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2891

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2890 and GFF2891 are separated by 418 nucleotidesGFF2891 and GFF2892 are separated by 143 nucleotides GFF2890 - Transcription termination factor Rho, at 14,347 to 15,606 GFF2890 GFF2891 - Thioredoxin, at 16,025 to 16,354 GFF2891 GFF2892 - ATP-dependent RNA helicase RhlB, at 16,498 to 17,763 GFF2892 Position (kb) 16 17Strain fitness (log2 ratio) -1 0 1at 15.647 kb on - strandat 15.955 kb on - strandat 15.955 kb on - strandat 16.016 kb on + strandat 16.017 kb on - strandat 16.024 kb on - strandat 16.024 kb on - strandat 16.108 kb on + strand, within GFF2891at 16.143 kb on + strand, within GFF2891at 16.157 kb on - strand, within GFF2891at 16.304 kb on + strand, within GFF2891at 16.304 kb on + strand, within GFF2891at 16.354 kb on + strandat 16.355 kb on - strandat 16.356 kb on + strandat 16.357 kb on - strandat 16.357 kb on - strandat 16.357 kb on - strandat 16.358 kb on + strandat 16.358 kb on + strandat 16.358 kb on + strandat 16.372 kb on + strandat 16.373 kb on - strandat 16.391 kb on + strandat 16.392 kb on - strandat 16.418 kb on + strandat 16.443 kb on + strandat 16.484 kb on + strandat 16.490 kb on - strandat 16.497 kb on + strandat 16.705 kb on + strand, within GFF2892at 16.790 kb on + strand, within GFF2892at 16.912 kb on - strand, within GFF2892at 16.917 kb on + strand, within GFF2892at 17.022 kb on + strand, within GFF2892at 17.052 kb on + strand, within GFF2892at 17.207 kb on - strand, within GFF2892at 17.234 kb on + strand, within GFF2892at 17.234 kb on + strand, within GFF2892at 17.310 kb on + strand, within GFF2892

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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15,647 - -0.4
15,955 - -0.4
15,955 - -0.3
16,016 + -1.3
16,017 - -0.4
16,024 - +0.1
16,024 - +0.4
16,108 + GFF2891 0.25 -0.4
16,143 + GFF2891 0.36 -0.9
16,157 - GFF2891 0.40 -0.7
16,304 + GFF2891 0.85 -0.5
16,304 + GFF2891 0.85 -0.6
16,354 + -1.0
16,355 - -0.6
16,356 + -0.4
16,357 - -0.6
16,357 - -0.4
16,357 - -0.1
16,358 + -0.4
16,358 + -0.5
16,358 + -0.8
16,372 + -0.1
16,373 - +0.3
16,391 + +0.6
16,392 - +0.4
16,418 + -0.7
16,443 + +0.1
16,484 + -0.2
16,490 - +0.2
16,497 + -0.1
16,705 + GFF2892 0.16 -1.1
16,790 + GFF2892 0.23 -0.3
16,912 - GFF2892 0.33 +0.4
16,917 + GFF2892 0.33 -0.6
17,022 + GFF2892 0.41 -0.9
17,052 + GFF2892 0.44 +0.1
17,207 - GFF2892 0.56 -0.6
17,234 + GFF2892 0.58 -0.1
17,234 + GFF2892 0.58 -0.2
17,310 + GFF2892 0.64 +0.3

Or see this region's nucleotide sequence