Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2623

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2622 and GFF2623 are separated by 120 nucleotidesGFF2623 and GFF2624 are separated by 906 nucleotides GFF2622 - secreted effector protein, at 146,911 to 148,137 GFF2622 GFF2623 - Putative inner membrane protein, at 148,258 to 148,602 GFF2623 GFF2624 - Putative periplasmic binding protein, at 149,509 to 150,270 GFF2624 Position (kb) 148 149Strain fitness (log2 ratio) -1 0 1at 148.028 kb on + strandat 148.028 kb on + strandat 148.110 kb on + strandat 148.112 kb on + strandat 148.124 kb on - strandat 148.182 kb on - strandat 148.248 kb on + strandat 148.254 kb on - strandat 148.485 kb on - strand, within GFF2623at 148.819 kb on - strandat 149.268 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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148,028 + -0.4
148,028 + +0.3
148,110 + -0.2
148,112 + -0.2
148,124 - -0.3
148,182 - -0.5
148,248 + -0.5
148,254 - -0.3
148,485 - GFF2623 0.66 -0.7
148,819 - +0.9
149,268 + -0.1

Or see this region's nucleotide sequence