Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2477

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2476 and GFF2477 are separated by 16 nucleotidesGFF2477 and GFF2478 are separated by 428 nucleotides GFF2476 - Signal peptidase I (EC 3.4.21.89), at 94,266 to 95,240 GFF2476 GFF2477 - Translation elongation factor LepA, at 95,257 to 97,056 GFF2477 GFF2478 - leucine-rich repeat protein, at 97,485 to 98,954 GFF2478 Position (kb) 95 96 97 98Strain fitness (log2 ratio) -3 -2 -1 0 1at 94.274 kb on + strandat 95.803 kb on - strand, within GFF2477at 95.813 kb on - strand, within GFF2477at 95.817 kb on - strand, within GFF2477at 95.836 kb on - strand, within GFF2477at 95.836 kb on - strand, within GFF2477at 95.909 kb on + strand, within GFF2477at 95.910 kb on - strand, within GFF2477at 95.910 kb on - strand, within GFF2477at 95.910 kb on - strand, within GFF2477at 95.914 kb on - strand, within GFF2477at 95.943 kb on - strand, within GFF2477at 96.170 kb on + strand, within GFF2477at 96.171 kb on - strand, within GFF2477at 96.171 kb on - strand, within GFF2477at 96.988 kb on - strandat 97.132 kb on - strandat 97.156 kb on - strandat 97.158 kb on + strandat 97.158 kb on + strandat 97.158 kb on + strandat 97.159 kb on - strandat 97.159 kb on - strandat 97.159 kb on - strandat 97.159 kb on - strandat 97.185 kb on + strandat 97.204 kb on + strandat 97.204 kb on + strandat 97.205 kb on - strandat 97.222 kb on + strandat 97.231 kb on - strandat 97.231 kb on - strandat 97.247 kb on + strandat 97.247 kb on + strandat 97.248 kb on - strandat 97.401 kb on - strandat 97.526 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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94,274 + +0.2
95,803 - GFF2477 0.30 -1.8
95,813 - GFF2477 0.31 -1.1
95,817 - GFF2477 0.31 +0.1
95,836 - GFF2477 0.32 -0.8
95,836 - GFF2477 0.32 -0.4
95,909 + GFF2477 0.36 -3.4
95,910 - GFF2477 0.36 -1.9
95,910 - GFF2477 0.36 -2.3
95,910 - GFF2477 0.36 -1.7
95,914 - GFF2477 0.36 -1.3
95,943 - GFF2477 0.38 -1.7
96,170 + GFF2477 0.51 -1.6
96,171 - GFF2477 0.51 +0.3
96,171 - GFF2477 0.51 -0.7
96,988 - -1.7
97,132 - +0.2
97,156 - +0.7
97,158 + -1.3
97,158 + -1.0
97,158 + +0.2
97,159 - +0.1
97,159 - +1.1
97,159 - +0.6
97,159 - +0.1
97,185 + +0.2
97,204 + +0.2
97,204 + +0.2
97,205 - +0.5
97,222 + +0.6
97,231 - +1.6
97,231 - +0.3
97,247 + +0.4
97,247 + +0.7
97,248 - +0.4
97,401 - +0.1
97,526 + -0.2

Or see this region's nucleotide sequence