Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF242

Experiment: LB_plus_SM_buffer

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF241 and GFF242 are separated by 471 nucleotidesGFF242 and GFF243 are separated by 48 nucleotidesGFF243 and GFF244 are separated by 229 nucleotidesGFF244 and GFF245 are separated by 150 nucleotides GFF241 - ATP-dependent DNA helicase UvrD/PcrA, at 14,375 to 16,537 GFF241 GFF242 - Magnesium and cobalt transport protein CorA, at 17,009 to 17,959 GFF242 GFF243 - FIG01047791: hypothetical protein, at 18,008 to 18,388 GFF243 GFF244 - hypothetical protein, at 18,618 to 18,746 GFF244 GFF245 - Protein rarD, at 18,897 to 19,781 GFF245 Position (kb) 17 18Strain fitness (log2 ratio) -3 -2 -1 0 1at 16.088 kb on - strand, within GFF241at 16.215 kb on - strand, within GFF241at 16.236 kb on - strand, within GFF241at 16.429 kb on + strandat 16.668 kb on - strandat 16.759 kb on + strandat 16.782 kb on - strandat 16.812 kb on - strandat 16.989 kb on - strandat 17.088 kb on + strandat 17.089 kb on - strandat 17.278 kb on + strand, within GFF242at 17.279 kb on - strand, within GFF242at 17.404 kb on - strand, within GFF242at 17.495 kb on - strand, within GFF242at 17.835 kb on - strand, within GFF242at 17.896 kb on + strandat 17.957 kb on + strandat 17.957 kb on + strandat 17.965 kb on + strandat 18.022 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
remove
16,088 - GFF241 0.79 +0.1
16,215 - GFF241 0.85 -0.5
16,236 - GFF241 0.86 +0.6
16,429 + -0.1
16,668 - +0.0
16,759 + -0.5
16,782 - -0.9
16,812 - -0.5
16,989 - -0.9
17,088 + -0.7
17,089 - -1.5
17,278 + GFF242 0.28 -1.7
17,279 - GFF242 0.28 -3.0
17,404 - GFF242 0.42 +0.0
17,495 - GFF242 0.51 -1.4
17,835 - GFF242 0.87 +0.3
17,896 + -1.1
17,957 + +0.7
17,957 + -0.1
17,965 + +0.1
18,022 + +0.2

Or see this region's nucleotide sequence