Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2175 and GFF2176 are separated by 216 nucleotides GFF2176 and GFF2177 are separated by 186 nucleotides GFF2177 and GFF2178 are separated by 46 nucleotides
GFF2175 - Exported zinc metalloprotease YfgC precursor, at 21,950 to 23,413
GFF2175
GFF2176 - Putative permease PerM (= YfgO), at 23,630 to 24,688
GFF2176
GFF2177 - Glycerate kinase (EC 2.7.1.31), at 24,875 to 25,228
GFF2177
GFF2178 - Thiol peroxidase, Bcp-type (EC 1.11.1.15), at 25,275 to 25,745
GFF2178
Position (kb) 23
24
25 Strain fitness (log2 ratio) -1
0
1 at 23.190 kb on + strand, within GFF2175 at 23.191 kb on - strand, within GFF2175 at 23.234 kb on + strand, within GFF2175 at 23.463 kb on + strand at 23.464 kb on - strand at 23.489 kb on - strand at 23.495 kb on - strand at 23.523 kb on + strand at 23.524 kb on - strand at 23.737 kb on - strand, within GFF2176 at 23.913 kb on - strand, within GFF2176 at 24.047 kb on - strand, within GFF2176 at 24.113 kb on + strand, within GFF2176 at 24.150 kb on + strand, within GFF2176 at 24.254 kb on + strand, within GFF2176 at 24.254 kb on + strand, within GFF2176 at 24.254 kb on + strand, within GFF2176 at 24.257 kb on - strand, within GFF2176 at 24.332 kb on + strand, within GFF2176 at 24.332 kb on + strand, within GFF2176 at 24.381 kb on - strand, within GFF2176 at 24.728 kb on - strand at 25.155 kb on + strand, within GFF2177 at 25.399 kb on + strand, within GFF2178 at 25.400 kb on - strand, within GFF2178
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 23,190 + GFF2175 0.85 +0.1 23,191 - GFF2175 0.85 -0.1 23,234 + GFF2175 0.88 +0.9 23,463 + +0.8 23,464 - +0.1 23,489 - +0.6 23,495 - +0.0 23,523 + -0.1 23,524 - -0.2 23,737 - GFF2176 0.10 -0.1 23,913 - GFF2176 0.27 +0.1 24,047 - GFF2176 0.39 -0.3 24,113 + GFF2176 0.46 -0.3 24,150 + GFF2176 0.49 -0.3 24,254 + GFF2176 0.59 +0.1 24,254 + GFF2176 0.59 -0.1 24,254 + GFF2176 0.59 -0.2 24,257 - GFF2176 0.59 -0.3 24,332 + GFF2176 0.66 -0.2 24,332 + GFF2176 0.66 -0.3 24,381 - GFF2176 0.71 +0.6 24,728 - -0.6 25,155 + GFF2177 0.79 +0.3 25,399 + GFF2178 0.26 +0.1 25,400 - GFF2178 0.27 +1.6
Or see this region's nucleotide sequence