Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2174

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2172 and GFF2173 are separated by 70 nucleotidesGFF2173 and GFF2174 are separated by 26 nucleotidesGFF2174 and GFF2175 are separated by 39 nucleotides GFF2172 - Uracil permease, at 19,439 to 20,728 GFF2172 GFF2173 - Chromosomal replication initiator protein DnaA, at 20,799 to 21,524 GFF2173 GFF2174 - Arsenate reductase (EC 1.20.4.1), at 21,551 to 21,910 GFF2174 GFF2175 - Exported zinc metalloprotease YfgC precursor, at 21,950 to 23,413 GFF2175 Position (kb) 21 22Strain fitness (log2 ratio) -2 -1 0 1at 20.691 kb on + strandat 20.774 kb on + strandat 20.955 kb on + strand, within GFF2173at 20.955 kb on + strand, within GFF2173at 20.955 kb on + strand, within GFF2173at 20.955 kb on + strand, within GFF2173at 20.956 kb on - strand, within GFF2173at 20.957 kb on + strand, within GFF2173at 20.957 kb on + strand, within GFF2173at 20.961 kb on + strand, within GFF2173at 21.183 kb on + strand, within GFF2173at 21.251 kb on - strand, within GFF2173at 21.760 kb on + strand, within GFF2174at 21.761 kb on - strand, within GFF2174at 21.889 kb on - strandat 21.964 kb on - strandat 21.984 kb on - strandat 22.104 kb on + strand, within GFF2175at 22.209 kb on + strand, within GFF2175at 22.275 kb on - strand, within GFF2175at 22.546 kb on + strand, within GFF2175at 22.561 kb on - strand, within GFF2175at 22.561 kb on - strand, within GFF2175

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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20,691 + -0.1
20,774 + -0.1
20,955 + GFF2173 0.21 -0.9
20,955 + GFF2173 0.21 -1.9
20,955 + GFF2173 0.21 -1.6
20,955 + GFF2173 0.21 -0.1
20,956 - GFF2173 0.22 -2.2
20,957 + GFF2173 0.22 -0.9
20,957 + GFF2173 0.22 -0.7
20,961 + GFF2173 0.22 -1.1
21,183 + GFF2173 0.53 -1.7
21,251 - GFF2173 0.62 -0.7
21,760 + GFF2174 0.58 -0.4
21,761 - GFF2174 0.58 -0.2
21,889 - +0.4
21,964 - -0.1
21,984 - -0.4
22,104 + GFF2175 0.11 +0.0
22,209 + GFF2175 0.18 +0.6
22,275 - GFF2175 0.22 +0.1
22,546 + GFF2175 0.41 -0.3
22,561 - GFF2175 0.42 +0.0
22,561 - GFF2175 0.42 +0.3

Or see this region's nucleotide sequence