Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2060 and GFF2061 are separated by 237 nucleotides GFF2061 and GFF2062 are separated by 94 nucleotides GFF2062 and GFF2063 are separated by 61 nucleotides
GFF2060 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 24,618 to 25,409
GFF2060
GFF2061 - Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup, at 25,647 to 26,546
GFF2061
GFF2062 - Predicted outer membrane lipoprotein YfeY, at 26,641 to 27,216
GFF2062
GFF2063 - Inner membrane protein YfeZ, at 27,278 to 27,727
GFF2063
Position (kb) 25
26
27 Strain fitness (log2 ratio) -2
-1
0
1 at 24.688 kb on + strand at 24.947 kb on - strand, within GFF2060 at 24.974 kb on + strand, within GFF2060 at 24.975 kb on - strand, within GFF2060 at 25.068 kb on - strand, within GFF2060 at 25.068 kb on - strand, within GFF2060 at 25.068 kb on - strand, within GFF2060 at 25.070 kb on + strand, within GFF2060 at 25.076 kb on + strand, within GFF2060 at 25.076 kb on + strand, within GFF2060 at 25.166 kb on + strand, within GFF2060 at 25.311 kb on + strand, within GFF2060 at 25.555 kb on + strand at 25.555 kb on + strand at 25.648 kb on + strand at 25.684 kb on + strand at 25.685 kb on - strand at 25.754 kb on + strand, within GFF2061 at 25.796 kb on - strand, within GFF2061 at 25.808 kb on - strand, within GFF2061 at 25.808 kb on - strand, within GFF2061 at 26.038 kb on + strand, within GFF2061 at 26.038 kb on + strand, within GFF2061 at 26.039 kb on - strand, within GFF2061 at 26.039 kb on - strand, within GFF2061 at 26.272 kb on + strand, within GFF2061 at 26.272 kb on + strand, within GFF2061 at 26.303 kb on - strand, within GFF2061 at 26.746 kb on - strand, within GFF2062 at 27.025 kb on + strand, within GFF2062 at 27.241 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 24,688 + -0.2 24,947 - GFF2060 0.42 +0.0 24,974 + GFF2060 0.45 +0.6 24,975 - GFF2060 0.45 +0.0 25,068 - GFF2060 0.57 +0.1 25,068 - GFF2060 0.57 -0.1 25,068 - GFF2060 0.57 +1.0 25,070 + GFF2060 0.57 -0.0 25,076 + GFF2060 0.58 +0.6 25,076 + GFF2060 0.58 +0.5 25,166 + GFF2060 0.69 +0.4 25,311 + GFF2060 0.88 -0.2 25,555 + -0.2 25,555 + +0.1 25,648 + -1.0 25,684 + -0.8 25,685 - -0.7 25,754 + GFF2061 0.12 -1.2 25,796 - GFF2061 0.17 -1.0 25,808 - GFF2061 0.18 -2.3 25,808 - GFF2061 0.18 -0.7 26,038 + GFF2061 0.43 -0.7 26,038 + GFF2061 0.43 -1.2 26,039 - GFF2061 0.44 -1.0 26,039 - GFF2061 0.44 -0.8 26,272 + GFF2061 0.69 -1.1 26,272 + GFF2061 0.69 -1.4 26,303 - GFF2061 0.73 -1.1 26,746 - GFF2062 0.18 -0.2 27,025 + GFF2062 0.67 -0.5 27,241 - -0.0
Or see this region's nucleotide sequence