Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1883 and GFF1884 are separated by 10 nucleotides GFF1884 and GFF1885 are separated by 14 nucleotides GFF1885 and GFF1886 overlap by 4 nucleotides
GFF1883 - NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3), at 76,191 to 76,745
GFF1883
GFF1884 - NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3), at 76,756 to 77,298
GFF1884
GFF1885 - NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3), at 77,313 to 78,290
GFF1885
GFF1886 - NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3), at 78,287 to 81,013
GFF1886
Position (kb)
77
78
79 Strain fitness (log2 ratio)
-2
-1
0
1 at 76.336 kb on + strand, within GFF1883 at 76.421 kb on - strand, within GFF1883 at 76.600 kb on + strand, within GFF1883 at 76.600 kb on + strand, within GFF1883 at 76.601 kb on - strand, within GFF1883 at 76.655 kb on - strand, within GFF1883 at 76.679 kb on + strand, within GFF1883 at 76.728 kb on - strand at 76.757 kb on + strand at 76.857 kb on - strand, within GFF1884 at 77.157 kb on + strand, within GFF1884 at 77.400 kb on + strand at 77.401 kb on - strand at 77.411 kb on - strand, within GFF1885 at 77.566 kb on + strand, within GFF1885 at 77.766 kb on - strand, within GFF1885 at 77.769 kb on - strand, within GFF1885 at 77.824 kb on + strand, within GFF1885 at 77.870 kb on - strand, within GFF1885 at 77.975 kb on + strand, within GFF1885 at 78.152 kb on - strand, within GFF1885 at 78.429 kb on + strand at 78.429 kb on + strand at 78.512 kb on - strand at 78.567 kb on + strand, within GFF1886 at 78.567 kb on + strand, within GFF1886 at 78.568 kb on - strand, within GFF1886 at 78.568 kb on - strand, within GFF1886 at 78.580 kb on + strand, within GFF1886 at 78.580 kb on + strand, within GFF1886 at 79.082 kb on - strand, within GFF1886 at 79.082 kb on - strand, within GFF1886 at 79.099 kb on - strand, within GFF1886 at 79.099 kb on - strand, within GFF1886
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 76,336 + GFF1883 0.26 -1.3 76,421 - GFF1883 0.41 -1.0 76,600 + GFF1883 0.74 -1.5 76,600 + GFF1883 0.74 -0.3 76,601 - GFF1883 0.74 -1.3 76,655 - GFF1883 0.84 -1.1 76,679 + GFF1883 0.88 -2.2 76,728 - -0.8 76,757 + -1.2 76,857 - GFF1884 0.19 -1.7 77,157 + GFF1884 0.74 -1.2 77,400 + -1.8 77,401 - -0.7 77,411 - GFF1885 0.10 -1.5 77,566 + GFF1885 0.26 -1.1 77,766 - GFF1885 0.46 -1.2 77,769 - GFF1885 0.47 -1.2 77,824 + GFF1885 0.52 -0.5 77,870 - GFF1885 0.57 -0.9 77,975 + GFF1885 0.68 -1.2 78,152 - GFF1885 0.86 -0.5 78,429 + -1.7 78,429 + -1.5 78,512 - -1.0 78,567 + GFF1886 0.10 -0.0 78,567 + GFF1886 0.10 -2.6 78,568 - GFF1886 0.10 -1.7 78,568 - GFF1886 0.10 -1.2 78,580 + GFF1886 0.11 -2.2 78,580 + GFF1886 0.11 -2.4 79,082 - GFF1886 0.29 -2.6 79,082 - GFF1886 0.29 -1.6 79,099 - GFF1886 0.30 -1.1 79,099 - GFF1886 0.30 -1.2
Or see this region's nucleotide sequence