Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1849 and GFF1850 are separated by 5 nucleotides GFF1850 and GFF1851 are separated by 25 nucleotides GFF1851 and GFF1852 are separated by 55 nucleotides
GFF1849 - Molybdopterin binding motif, CinA N-terminal domain / C-terminal domain of CinA type E, at 42,251 to 42,427
GFF1849
GFF1850 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.-), at 42,433 to 43,236
GFF1850
GFF1851 - L-rhamnonate transporter (predicted by genome context), at 43,262 to 44,551
GFF1851
GFF1852 - L-rhamnonate dehydratase (EC 4.2.1.90), at 44,607 to 45,812
GFF1852
Position (kb) 43
44
45 Strain fitness (log2 ratio) -1
0
1 at 42.331 kb on + strand, within GFF1849 at 42.365 kb on + strand, within GFF1849 at 42.377 kb on - strand, within GFF1849 at 42.379 kb on - strand, within GFF1849 at 42.519 kb on + strand, within GFF1850 at 42.520 kb on - strand, within GFF1850 at 42.520 kb on - strand, within GFF1850 at 42.627 kb on - strand, within GFF1850 at 42.680 kb on + strand, within GFF1850 at 42.823 kb on - strand, within GFF1850 at 42.823 kb on - strand, within GFF1850 at 42.824 kb on + strand, within GFF1850 at 42.825 kb on - strand, within GFF1850 at 42.825 kb on - strand, within GFF1850 at 42.999 kb on + strand, within GFF1850 at 43.000 kb on - strand, within GFF1850 at 43.054 kb on + strand, within GFF1850 at 43.065 kb on - strand, within GFF1850 at 43.102 kb on + strand, within GFF1850 at 43.103 kb on - strand, within GFF1850 at 43.105 kb on + strand, within GFF1850 at 43.147 kb on - strand, within GFF1850 at 43.148 kb on + strand, within GFF1850 at 43.148 kb on + strand, within GFF1850 at 43.149 kb on - strand, within GFF1850 at 43.418 kb on - strand, within GFF1851 at 43.485 kb on - strand, within GFF1851 at 43.508 kb on + strand, within GFF1851 at 43.669 kb on + strand, within GFF1851 at 43.739 kb on - strand, within GFF1851 at 43.791 kb on - strand, within GFF1851 at 43.813 kb on - strand, within GFF1851 at 43.816 kb on + strand, within GFF1851 at 43.906 kb on + strand, within GFF1851 at 44.115 kb on + strand, within GFF1851 at 44.116 kb on - strand, within GFF1851 at 44.169 kb on - strand, within GFF1851 at 44.169 kb on - strand, within GFF1851 at 44.225 kb on + strand, within GFF1851 at 44.421 kb on - strand, within GFF1851 at 44.474 kb on + strand at 44.474 kb on + strand at 44.478 kb on + strand at 44.492 kb on - strand at 44.501 kb on + strand at 44.537 kb on + strand at 44.616 kb on - strand at 44.617 kb on + strand at 44.795 kb on + strand, within GFF1852 at 44.804 kb on + strand, within GFF1852 at 44.807 kb on + strand, within GFF1852 at 44.931 kb on - strand, within GFF1852 at 44.933 kb on + strand, within GFF1852 at 45.046 kb on + strand, within GFF1852 at 45.046 kb on + strand, within GFF1852 at 45.354 kb on - strand, within GFF1852 at 45.448 kb on + strand, within GFF1852 at 45.449 kb on - strand, within GFF1852 at 45.451 kb on + strand, within GFF1852 at 45.451 kb on + strand, within GFF1852 at 45.525 kb on - strand, within GFF1852
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 42,331 + GFF1849 0.45 +0.1 42,365 + GFF1849 0.64 -0.5 42,377 - GFF1849 0.71 +0.1 42,379 - GFF1849 0.72 -0.2 42,519 + GFF1850 0.11 +0.5 42,520 - GFF1850 0.11 +0.3 42,520 - GFF1850 0.11 +0.1 42,627 - GFF1850 0.24 +0.4 42,680 + GFF1850 0.31 +0.0 42,823 - GFF1850 0.49 +1.3 42,823 - GFF1850 0.49 +0.3 42,824 + GFF1850 0.49 -0.4 42,825 - GFF1850 0.49 +0.2 42,825 - GFF1850 0.49 +0.1 42,999 + GFF1850 0.70 +0.1 43,000 - GFF1850 0.71 +0.4 43,054 + GFF1850 0.77 +0.3 43,065 - GFF1850 0.79 +0.2 43,102 + GFF1850 0.83 +0.2 43,103 - GFF1850 0.83 -0.0 43,105 + GFF1850 0.84 -0.4 43,147 - GFF1850 0.89 +1.1 43,148 + GFF1850 0.89 -0.1 43,148 + GFF1850 0.89 +1.2 43,149 - GFF1850 0.89 -0.2 43,418 - GFF1851 0.12 -0.1 43,485 - GFF1851 0.17 +0.0 43,508 + GFF1851 0.19 +0.2 43,669 + GFF1851 0.32 +0.3 43,739 - GFF1851 0.37 -0.0 43,791 - GFF1851 0.41 +1.6 43,813 - GFF1851 0.43 +0.5 43,816 + GFF1851 0.43 -0.4 43,906 + GFF1851 0.50 +0.5 44,115 + GFF1851 0.66 +0.2 44,116 - GFF1851 0.66 -0.1 44,169 - GFF1851 0.70 +0.2 44,169 - GFF1851 0.70 -0.1 44,225 + GFF1851 0.75 -0.2 44,421 - GFF1851 0.90 -0.1 44,474 + -0.1 44,474 + -0.5 44,478 + +0.1 44,492 - -0.2 44,501 + -0.2 44,537 + +0.4 44,616 - -1.1 44,617 + +0.5 44,795 + GFF1852 0.16 +1.1 44,804 + GFF1852 0.16 -0.0 44,807 + GFF1852 0.17 -0.6 44,931 - GFF1852 0.27 +0.4 44,933 + GFF1852 0.27 -0.5 45,046 + GFF1852 0.36 -0.5 45,046 + GFF1852 0.36 -0.2 45,354 - GFF1852 0.62 +0.0 45,448 + GFF1852 0.70 -0.2 45,449 - GFF1852 0.70 +1.1 45,451 + GFF1852 0.70 -0.1 45,451 + GFF1852 0.70 +1.2 45,525 - GFF1852 0.76 -0.1
Or see this region's nucleotide sequence