Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF156

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF154 and GFF155 are separated by 15 nucleotidesGFF155 and GFF156 are separated by 119 nucleotidesGFF156 and GFF157 are separated by 1 nucleotides GFF154 - Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129), at 145,598 to 147,364 GFF154 GFF155 - Cell division protein FtsL, at 147,380 to 147,622 GFF155 GFF156 - rRNA small subunit methyltransferase H, at 147,742 to 148,683 GFF156 GFF157 - Cell division protein MraZ, at 148,685 to 149,143 GFF157 Position (kb) 147 148 149Strain fitness (log2 ratio) -1 0 1 2at 148.195 kb on - strand, within GFF156at 148.917 kb on - strand, within GFF157at 148.926 kb on - strand, within GFF157at 149.036 kb on - strand, within GFF157at 149.040 kb on - strand, within GFF157at 149.163 kb on - strandat 149.326 kb on + strandat 149.326 kb on + strandat 149.426 kb on + strandat 149.434 kb on - strandat 149.434 kb on - strandat 149.461 kb on - strandat 149.479 kb on + strandat 149.593 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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148,195 - GFF156 0.48 -1.0
148,917 - GFF157 0.51 +0.8
148,926 - GFF157 0.53 +0.4
149,036 - GFF157 0.76 -0.4
149,040 - GFF157 0.77 -0.5
149,163 - -0.1
149,326 + -0.3
149,326 + -0.4
149,426 + -0.5
149,434 - +0.7
149,434 - +0.1
149,461 - +0.2
149,479 + +2.1
149,593 - -0.0

Or see this region's nucleotide sequence