Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1364 and GFF1365 are separated by 117 nucleotides GFF1365 and GFF1366 overlap by 12 nucleotides GFF1366 and GFF1367 are separated by 359 nucleotides GFF1367 and GFF1368 are separated by 75 nucleotides GFF1368 and GFF1369 overlap by 26 nucleotides
GFF1364 - Sodium-dependent transporter, at 16,843 to 17,784
GFF1364
GFF1365 - FIG01046261: hypothetical protein, at 17,902 to 18,057
GFF1365
GFF1366 - putative cytoplasmic protein, at 18,046 to 18,774
GFF1366
GFF1367 - putative inner membrane protein, at 19,134 to 19,322
GFF1367
GFF1368 - hypothetical protein, at 19,398 to 19,535
GFF1368
GFF1369 - putative cytoplasmic protein, at 19,510 to 19,965
GFF1369
Position (kb) 18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.107 kb on - strand, within GFF1364 at 17.151 kb on + strand, within GFF1364 at 17.152 kb on - strand, within GFF1364 at 17.455 kb on + strand, within GFF1364 at 17.456 kb on - strand, within GFF1364 at 17.563 kb on + strand, within GFF1364 at 17.661 kb on + strand, within GFF1364 at 17.662 kb on - strand, within GFF1364 at 17.720 kb on + strand at 17.723 kb on + strand at 17.802 kb on + strand at 17.845 kb on + strand at 17.846 kb on - strand at 17.846 kb on - strand at 17.846 kb on - strand at 17.849 kb on + strand at 17.850 kb on - strand at 17.955 kb on - strand, within GFF1365 at 17.982 kb on - strand, within GFF1365 at 18.066 kb on - strand at 18.102 kb on + strand at 18.107 kb on + strand at 18.261 kb on + strand, within GFF1366 at 18.549 kb on + strand, within GFF1366 at 18.708 kb on + strand at 18.835 kb on - strand at 19.580 kb on - strand, within GFF1369 at 19.621 kb on - strand, within GFF1369 at 19.640 kb on + strand, within GFF1369 at 19.673 kb on + strand, within GFF1369 at 19.749 kb on + strand, within GFF1369 at 19.766 kb on - strand, within GFF1369 at 19.766 kb on - strand, within GFF1369 at 19.768 kb on + strand, within GFF1369 at 19.768 kb on + strand, within GFF1369 at 19.769 kb on - strand, within GFF1369 at 19.769 kb on - strand, within GFF1369
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 17,107 - GFF1364 0.28 +0.3 17,151 + GFF1364 0.33 +0.2 17,152 - GFF1364 0.33 +0.1 17,455 + GFF1364 0.65 -0.2 17,456 - GFF1364 0.65 -0.3 17,563 + GFF1364 0.76 +0.2 17,661 + GFF1364 0.87 +0.1 17,662 - GFF1364 0.87 -0.1 17,720 + +0.3 17,723 + +0.1 17,802 + -0.2 17,845 + -0.0 17,846 - -0.8 17,846 - -0.7 17,846 - +0.2 17,849 + -0.1 17,850 - +0.0 17,955 - GFF1365 0.34 +0.4 17,982 - GFF1365 0.51 +0.8 18,066 - -0.3 18,102 + -0.2 18,107 + +1.0 18,261 + GFF1366 0.29 -0.7 18,549 + GFF1366 0.69 -0.2 18,708 + +0.4 18,835 - -0.3 19,580 - GFF1369 0.15 +0.4 19,621 - GFF1369 0.24 +0.1 19,640 + GFF1369 0.29 +1.9 19,673 + GFF1369 0.36 -0.0 19,749 + GFF1369 0.52 -0.2 19,766 - GFF1369 0.56 +1.7 19,766 - GFF1369 0.56 -0.2 19,768 + GFF1369 0.57 -0.3 19,768 + GFF1369 0.57 +0.1 19,769 - GFF1369 0.57 -2.4 19,769 - GFF1369 0.57 -0.3
Or see this region's nucleotide sequence