Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1095

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1093 and GFF1094 are separated by 60 nucleotidesGFF1094 and GFF1095 are separated by 16 nucleotidesGFF1095 and GFF1096 are separated by 380 nucleotides GFF1093 - Putative phage protein, at 276,914 to 277,216 GFF1093 GFF1094 - FIG01045823: hypothetical protein, at 277,277 to 277,810 GFF1094 GFF1095 - Putative membrane protein, at 277,827 to 278,270 GFF1095 GFF1096 - Chitinase (EC 3.2.1.14), at 278,651 to 280,750 GFF1096 Position (kb) 277 278 279Strain fitness (log2 ratio) -1 0 1at 277.346 kb on + strand, within GFF1094at 277.350 kb on + strand, within GFF1094at 277.543 kb on - strand, within GFF1094at 277.864 kb on - strandat 278.055 kb on + strand, within GFF1095at 278.783 kb on - strandat 278.866 kb on + strand, within GFF1096at 279.068 kb on + strand, within GFF1096at 279.069 kb on - strand, within GFF1096at 279.070 kb on + strand, within GFF1096at 279.071 kb on - strand, within GFF1096at 279.130 kb on + strand, within GFF1096at 279.131 kb on - strand, within GFF1096

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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277,346 + GFF1094 0.13 -0.2
277,350 + GFF1094 0.14 -0.4
277,543 - GFF1094 0.50 -0.3
277,864 - -0.7
278,055 + GFF1095 0.51 -1.0
278,783 - -0.3
278,866 + GFF1096 0.10 -0.1
279,068 + GFF1096 0.20 +0.3
279,069 - GFF1096 0.20 -0.2
279,070 + GFF1096 0.20 -0.2
279,071 - GFF1096 0.20 +0.3
279,130 + GFF1096 0.23 -0.3
279,131 - GFF1096 0.23 -0.1

Or see this region's nucleotide sequence