Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1090

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1089 and GFF1090 are separated by 85 nucleotidesGFF1090 and GFF1091 are separated by 110 nucleotidesGFF1091 and GFF1092 are separated by 55 nucleotides GFF1089 - Chaperone protein DnaK, at 272,377 to 274,293 GFF1089 GFF1090 - Chaperone protein DnaJ, at 274,379 to 275,518 GFF1090 GFF1091 - hypothetical protein, at 275,629 to 275,742 GFF1091 GFF1092 - Putative arylsulfatase regulatory protein, at 275,798 to 276,745 GFF1092 Position (kb) 274 275 276Strain fitness (log2 ratio) -1 0 1at 274.351 kb on + strandat 274.981 kb on + strand, within GFF1090at 275.120 kb on + strand, within GFF1090at 275.120 kb on + strand, within GFF1090at 275.170 kb on + strand, within GFF1090at 276.055 kb on + strand, within GFF1092

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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274,351 + +0.0
274,981 + GFF1090 0.53 -1.2
275,120 + GFF1090 0.65 -0.4
275,120 + GFF1090 0.65 +1.0
275,170 + GFF1090 0.69 -0.2
276,055 + GFF1092 0.27 +0.2

Or see this region's nucleotide sequence