Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5501 and Atu5502 are separated by 114 nucleotides Atu5502 and Atu5503 are separated by 109 nucleotides
Atu5501: Atu5501 - hypothetical protein, at 492,412 to 493,074
Atu5501
Atu5502: Atu5502 - hypothetical protein, at 493,189 to 493,944
Atu5502
Atu5503: Atu5503 - hypothetical protein, at 494,054 to 495,511
Atu5503
Position (kb) 493
494 Strain fitness (log2 ratio) -1
0
1
2
3 at 492.227 kb on - strand at 492.232 kb on - strand at 492.252 kb on + strand at 492.276 kb on - strand at 492.324 kb on + strand at 492.332 kb on - strand at 492.410 kb on + strand at 492.454 kb on - strand at 492.637 kb on + strand, within Atu5501 at 492.645 kb on - strand, within Atu5501 at 492.664 kb on - strand, within Atu5501 at 492.833 kb on + strand, within Atu5501 at 492.992 kb on + strand, within Atu5501 at 493.042 kb on + strand at 493.089 kb on + strand at 493.089 kb on + strand at 493.218 kb on + strand at 493.417 kb on + strand, within Atu5502 at 493.417 kb on + strand, within Atu5502 at 493.478 kb on - strand, within Atu5502 at 493.483 kb on - strand, within Atu5502 at 493.766 kb on + strand, within Atu5502 at 493.766 kb on + strand, within Atu5502 at 493.768 kb on + strand, within Atu5502 at 493.823 kb on + strand, within Atu5502 at 493.825 kb on + strand, within Atu5502 at 493.833 kb on + strand, within Atu5502 at 494.030 kb on - strand at 494.066 kb on + strand at 494.066 kb on - strand at 494.066 kb on - strand at 494.072 kb on - strand at 494.090 kb on + strand at 494.109 kb on + strand at 494.116 kb on - strand at 494.186 kb on + strand at 494.196 kb on + strand at 494.204 kb on - strand, within Atu5503 at 494.219 kb on + strand, within Atu5503 at 494.221 kb on + strand, within Atu5503 at 494.229 kb on - strand, within Atu5503 at 494.229 kb on - strand, within Atu5503 at 494.229 kb on - strand, within Atu5503 at 494.229 kb on - strand, within Atu5503 at 494.239 kb on - strand, within Atu5503 at 494.242 kb on + strand, within Atu5503 at 494.354 kb on + strand, within Atu5503 at 494.355 kb on + strand, within Atu5503 at 494.368 kb on + strand, within Atu5503 at 494.368 kb on + strand, within Atu5503 at 494.368 kb on + strand, within Atu5503 at 494.368 kb on + strand, within Atu5503 at 494.376 kb on - strand, within Atu5503 at 494.407 kb on + strand, within Atu5503 at 494.407 kb on + strand, within Atu5503 at 494.407 kb on + strand, within Atu5503 at 494.407 kb on - strand, within Atu5503 at 494.488 kb on - strand, within Atu5503 at 494.692 kb on - strand, within Atu5503 at 494.766 kb on - strand, within Atu5503 at 494.771 kb on - strand, within Atu5503 at 494.771 kb on - strand, within Atu5503 at 494.783 kb on + strand, within Atu5503 at 494.810 kb on - strand, within Atu5503 at 494.821 kb on + strand, within Atu5503 at 494.900 kb on - strand, within Atu5503 at 494.903 kb on - strand, within Atu5503 at 494.939 kb on + strand, within Atu5503
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 492,227 - -0.3 492,232 - -0.1 492,252 + +0.6 492,276 - +0.4 492,324 + -0.9 492,332 - -0.1 492,410 + +1.9 492,454 - -0.3 492,637 + Atu5501 0.34 -0.9 492,645 - Atu5501 0.35 +1.9 492,664 - Atu5501 0.38 +1.0 492,833 + Atu5501 0.63 +0.6 492,992 + Atu5501 0.87 -0.1 493,042 + -1.2 493,089 + +1.2 493,089 + +0.6 493,218 + -0.4 493,417 + Atu5502 0.30 +0.9 493,417 + Atu5502 0.30 +1.0 493,478 - Atu5502 0.38 +1.7 493,483 - Atu5502 0.39 +1.4 493,766 + Atu5502 0.76 +2.3 493,766 + Atu5502 0.76 +1.1 493,768 + Atu5502 0.77 +0.1 493,823 + Atu5502 0.84 +1.2 493,825 + Atu5502 0.84 -0.7 493,833 + Atu5502 0.85 +1.2 494,030 - +1.4 494,066 + +0.1 494,066 - +0.3 494,066 - +1.2 494,072 - +0.2 494,090 + -0.3 494,109 + +0.1 494,116 - +0.5 494,186 + -0.4 494,196 + +1.2 494,204 - Atu5503 0.10 +1.9 494,219 + Atu5503 0.11 -0.2 494,221 + Atu5503 0.11 +1.3 494,229 - Atu5503 0.12 +0.6 494,229 - Atu5503 0.12 -0.1 494,229 - Atu5503 0.12 -0.4 494,229 - Atu5503 0.12 -1.6 494,239 - Atu5503 0.13 +1.6 494,242 + Atu5503 0.13 -0.9 494,354 + Atu5503 0.21 -0.6 494,355 + Atu5503 0.21 +0.0 494,368 + Atu5503 0.22 +2.0 494,368 + Atu5503 0.22 +2.2 494,368 + Atu5503 0.22 +1.4 494,368 + Atu5503 0.22 -0.3 494,376 - Atu5503 0.22 +1.2 494,407 + Atu5503 0.24 -0.6 494,407 + Atu5503 0.24 +0.9 494,407 + Atu5503 0.24 +1.9 494,407 - Atu5503 0.24 +0.3 494,488 - Atu5503 0.30 -1.7 494,692 - Atu5503 0.44 +0.3 494,766 - Atu5503 0.49 +2.2 494,771 - Atu5503 0.49 -0.6 494,771 - Atu5503 0.49 -0.1 494,783 + Atu5503 0.50 +1.0 494,810 - Atu5503 0.52 +0.3 494,821 + Atu5503 0.53 +3.6 494,900 - Atu5503 0.58 +1.0 494,903 - Atu5503 0.58 -0.1 494,939 + Atu5503 0.61 -1.1
Or see this region's nucleotide sequence