Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0409 and Atu0410 are separated by 127 nucleotides Atu0410 and Atu8119 are separated by 114 nucleotides Atu8119 and Atu8120 are separated by 92 nucleotides
Atu0409: Atu0409 - ferrichrome iron receptor, at 406,406 to 408,595
Atu0409
Atu0410: Atu0410 - transcriptional regulator, AraC family, at 408,723 to 409,586
Atu0410
Atu8119: Atu8119 - hypothetical protein, at 409,701 to 410,108
Atu8119
Atu8120: Atu8120 - hypothetical protein, at 410,201 to 410,443
Atu8120
Position (kb) 408
409
410 Strain fitness (log2 ratio) -2
-1
0
1
2 at 407.828 kb on + strand, within Atu0409 at 407.873 kb on - strand, within Atu0409 at 407.897 kb on + strand, within Atu0409 at 407.902 kb on + strand, within Atu0409 at 407.928 kb on + strand, within Atu0409 at 407.987 kb on + strand, within Atu0409 at 408.068 kb on - strand, within Atu0409 at 408.085 kb on + strand, within Atu0409 at 408.146 kb on + strand, within Atu0409 at 408.231 kb on - strand, within Atu0409 at 408.233 kb on + strand, within Atu0409 at 408.315 kb on + strand, within Atu0409 at 408.328 kb on - strand, within Atu0409 at 408.328 kb on - strand, within Atu0409 at 408.350 kb on + strand, within Atu0409 at 408.358 kb on - strand, within Atu0409 at 408.383 kb on + strand at 408.396 kb on - strand at 408.458 kb on + strand at 408.474 kb on - strand at 408.484 kb on - strand at 408.525 kb on + strand at 408.578 kb on - strand at 408.578 kb on - strand at 408.709 kb on - strand at 408.709 kb on - strand at 408.777 kb on - strand at 408.874 kb on + strand, within Atu0410 at 408.896 kb on - strand, within Atu0410 at 408.928 kb on + strand, within Atu0410 at 408.993 kb on - strand, within Atu0410 at 409.062 kb on + strand, within Atu0410 at 409.062 kb on + strand, within Atu0410 at 409.062 kb on + strand, within Atu0410 at 409.106 kb on - strand, within Atu0410 at 409.147 kb on - strand, within Atu0410 at 409.196 kb on - strand, within Atu0410 at 409.223 kb on + strand, within Atu0410 at 409.230 kb on - strand, within Atu0410 at 409.397 kb on - strand, within Atu0410 at 409.476 kb on - strand, within Atu0410 at 409.549 kb on + strand at 409.600 kb on - strand at 409.661 kb on + strand at 409.661 kb on + strand at 409.711 kb on + strand at 409.748 kb on + strand, within Atu8119 at 409.765 kb on + strand, within Atu8119 at 409.798 kb on - strand, within Atu8119 at 409.798 kb on - strand, within Atu8119 at 409.813 kb on - strand, within Atu8119 at 409.887 kb on + strand, within Atu8119 at 409.895 kb on - strand, within Atu8119 at 409.895 kb on - strand, within Atu8119 at 409.895 kb on - strand, within Atu8119 at 409.895 kb on - strand, within Atu8119 at 409.937 kb on + strand, within Atu8119 at 409.957 kb on + strand, within Atu8119 at 409.967 kb on + strand, within Atu8119 at 409.967 kb on + strand, within Atu8119 at 409.967 kb on + strand, within Atu8119 at 409.975 kb on - strand, within Atu8119 at 410.048 kb on + strand, within Atu8119 at 410.056 kb on - strand, within Atu8119 at 410.056 kb on - strand, within Atu8119 at 410.070 kb on + strand at 410.078 kb on + strand at 410.078 kb on - strand at 410.110 kb on + strand at 410.202 kb on - strand at 410.238 kb on - strand, within Atu8120 at 410.283 kb on - strand, within Atu8120 at 410.336 kb on - strand, within Atu8120 at 410.450 kb on + strand at 410.452 kb on + strand at 410.460 kb on - strand at 410.460 kb on - strand at 410.460 kb on - strand at 410.504 kb on - strand at 410.511 kb on - strand at 410.529 kb on + strand at 410.529 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 407,828 + Atu0409 0.65 +2.3 407,873 - Atu0409 0.67 +0.4 407,897 + Atu0409 0.68 +1.6 407,902 + Atu0409 0.68 -0.3 407,928 + Atu0409 0.69 -0.2 407,987 + Atu0409 0.72 -0.7 408,068 - Atu0409 0.76 -0.2 408,085 + Atu0409 0.77 -0.1 408,146 + Atu0409 0.79 +0.5 408,231 - Atu0409 0.83 -1.0 408,233 + Atu0409 0.83 -0.5 408,315 + Atu0409 0.87 +0.1 408,328 - Atu0409 0.88 -0.4 408,328 - Atu0409 0.88 -0.2 408,350 + Atu0409 0.89 +0.1 408,358 - Atu0409 0.89 +1.1 408,383 + +0.2 408,396 - +0.9 408,458 + +0.8 408,474 - +0.2 408,484 - -0.7 408,525 + -0.3 408,578 - +1.0 408,578 - +0.5 408,709 - -0.4 408,709 - +1.3 408,777 - +0.3 408,874 + Atu0410 0.17 -0.5 408,896 - Atu0410 0.20 -0.5 408,928 + Atu0410 0.24 -0.9 408,993 - Atu0410 0.31 -0.0 409,062 + Atu0410 0.39 -2.1 409,062 + Atu0410 0.39 -0.1 409,062 + Atu0410 0.39 -0.2 409,106 - Atu0410 0.44 -1.6 409,147 - Atu0410 0.49 -0.2 409,196 - Atu0410 0.55 -0.3 409,223 + Atu0410 0.58 +1.2 409,230 - Atu0410 0.59 +0.1 409,397 - Atu0410 0.78 -0.1 409,476 - Atu0410 0.87 -0.8 409,549 + -0.7 409,600 - -0.2 409,661 + +0.8 409,661 + -0.2 409,711 + +0.5 409,748 + Atu8119 0.12 +0.6 409,765 + Atu8119 0.16 -0.5 409,798 - Atu8119 0.24 +0.1 409,798 - Atu8119 0.24 -0.1 409,813 - Atu8119 0.27 -1.1 409,887 + Atu8119 0.46 -0.6 409,895 - Atu8119 0.48 -1.1 409,895 - Atu8119 0.48 -0.1 409,895 - Atu8119 0.48 -0.9 409,895 - Atu8119 0.48 +0.4 409,937 + Atu8119 0.58 -0.8 409,957 + Atu8119 0.63 +0.5 409,967 + Atu8119 0.65 +0.4 409,967 + Atu8119 0.65 +0.6 409,967 + Atu8119 0.65 +0.1 409,975 - Atu8119 0.67 -0.2 410,048 + Atu8119 0.85 +0.0 410,056 - Atu8119 0.87 -0.9 410,056 - Atu8119 0.87 -0.4 410,070 + -0.3 410,078 + +0.5 410,078 - +0.2 410,110 + -0.4 410,202 - -0.4 410,238 - Atu8120 0.15 -0.4 410,283 - Atu8120 0.34 +0.0 410,336 - Atu8120 0.56 -0.1 410,450 + +1.1 410,452 + +0.1 410,460 - +0.5 410,460 - -0.1 410,460 - +1.7 410,504 - +0.2 410,511 - -0.1 410,529 + +0.9 410,529 + +0.2
Or see this region's nucleotide sequence