Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29375

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS29365 and ABID97_RS29370 are separated by 6 nucleotidesABID97_RS29370 and ABID97_RS29375 are separated by 32 nucleotidesABID97_RS29375 and ABID97_RS29380 are separated by 47 nucleotidesABID97_RS29380 and ABID97_RS29385 are separated by 67 nucleotides ABID97_RS29365: ABID97_RS29365 - cupin domain-containing protein, at 799,193 to 799,744 _RS29365 ABID97_RS29370: ABID97_RS29370 - FCD domain-containing protein, at 799,751 to 800,470 _RS29370 ABID97_RS29375: ABID97_RS29375 - VOC family protein, at 800,503 to 801,063 _RS29375 ABID97_RS29380: ABID97_RS29380 - fumarylacetoacetate hydrolase family protein, at 801,111 to 801,974 _RS29380 ABID97_RS29385: ABID97_RS29385 - tripartite tricarboxylate transporter substrate binding protein, at 802,042 to 803,013 _RS29385 Position (kb) 800 801 802Strain fitness (log2 ratio) -1 0 1at 799.757 kb on - strandat 800.468 kb on + strandat 800.469 kb on - strandat 800.578 kb on + strand, within ABID97_RS29375at 800.845 kb on + strand, within ABID97_RS29375at 801.127 kb on - strandat 801.241 kb on - strand, within ABID97_RS29380at 801.354 kb on + strand, within ABID97_RS29380at 801.580 kb on - strand, within ABID97_RS29380at 801.589 kb on - strand, within ABID97_RS29380

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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799,757 - +1.5
800,468 + +0.6
800,469 - -0.1
800,578 + ABID97_RS29375 0.13 -0.7
800,845 + ABID97_RS29375 0.61 -0.4
801,127 - +0.1
801,241 - ABID97_RS29380 0.15 -0.1
801,354 + ABID97_RS29380 0.28 -0.5
801,580 - ABID97_RS29380 0.54 +0.1
801,589 - ABID97_RS29380 0.55 +0.3

Or see this region's nucleotide sequence