Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29340 and ABID97_RS29345 are separated by 27 nucleotides ABID97_RS29345 and ABID97_RS29350 are separated by 120 nucleotides ABID97_RS29350 and ABID97_RS29355 overlap by 4 nucleotides
ABID97_RS29340: ABID97_RS29340 - amylo-alpha-1,6-glucosidase, at 792,826 to 794,976
_RS29340
ABID97_RS29345: ABID97_RS29345 - IclR family transcriptional regulator, at 795,004 to 795,786
_RS29345
ABID97_RS29350: ABID97_RS29350 - nuclear transport factor 2 family protein, at 795,907 to 796,305
_RS29350
ABID97_RS29355: ABID97_RS29355 - bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase, at 796,302 to 797,918
_RS29355
Position (kb) 795
796 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 794.185 kb on + strand, within ABID97_RS29340 at 794.186 kb on - strand, within ABID97_RS29340 at 794.186 kb on - strand, within ABID97_RS29340 at 794.192 kb on - strand, within ABID97_RS29340 at 794.192 kb on - strand, within ABID97_RS29340 at 794.579 kb on - strand, within ABID97_RS29340 at 794.974 kb on + strand at 795.290 kb on + strand, within ABID97_RS29345 at 795.608 kb on + strand, within ABID97_RS29345 at 795.609 kb on - strand, within ABID97_RS29345 at 795.609 kb on - strand, within ABID97_RS29345 at 795.609 kb on - strand, within ABID97_RS29345 at 795.819 kb on + strand at 796.145 kb on + strand, within ABID97_RS29350 at 796.146 kb on - strand, within ABID97_RS29350 at 796.411 kb on + strand at 796.412 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 794,185 + ABID97_RS29340 0.63 -0.0 794,186 - ABID97_RS29340 0.63 +0.7 794,186 - ABID97_RS29340 0.63 +0.4 794,192 - ABID97_RS29340 0.64 +0.5 794,192 - ABID97_RS29340 0.64 -0.4 794,579 - ABID97_RS29340 0.81 -0.1 794,974 + -0.2 795,290 + ABID97_RS29345 0.37 -0.7 795,608 + ABID97_RS29345 0.77 -1.8 795,609 - ABID97_RS29345 0.77 -4.3 795,609 - ABID97_RS29345 0.77 -1.7 795,609 - ABID97_RS29345 0.77 -0.5 795,819 + +0.6 796,145 + ABID97_RS29350 0.60 -0.7 796,146 - ABID97_RS29350 0.60 +0.5 796,411 + -0.4 796,412 - +0.5
Or see this region's nucleotide sequence