Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28730 and ABID97_RS28735 overlap by 4 nucleotides ABID97_RS28735 and ABID97_RS28740 are separated by 91 nucleotides ABID97_RS28740 and ABID97_RS28745 are separated by 84 nucleotides
ABID97_RS28730: ABID97_RS28730 - PAS domain-containing sensor histidine kinase, at 662,432 to 663,580
_RS28730
ABID97_RS28735: ABID97_RS28735 - alpha/beta hydrolase, at 663,577 to 664,392
_RS28735
ABID97_RS28740: ABID97_RS28740 - NADH:flavin oxidoreductase/NADH oxidase, at 664,484 to 665,599
_RS28740
ABID97_RS28745: ABID97_RS28745 - GMC family oxidoreductase N-terminal domain-containing protein, at 665,684 to 667,282
_RS28745
Position (kb) 664
665
666 Strain fitness (log2 ratio) -2
-1
0
1 at 663.716 kb on + strand, within ABID97_RS28735 at 663.716 kb on + strand, within ABID97_RS28735 at 663.716 kb on + strand, within ABID97_RS28735 at 663.716 kb on + strand, within ABID97_RS28735 at 663.947 kb on + strand, within ABID97_RS28735 at 663.948 kb on - strand, within ABID97_RS28735 at 664.026 kb on - strand, within ABID97_RS28735 at 664.026 kb on - strand, within ABID97_RS28735 at 664.211 kb on + strand, within ABID97_RS28735 at 664.614 kb on + strand, within ABID97_RS28740 at 664.758 kb on + strand, within ABID97_RS28740 at 664.759 kb on - strand, within ABID97_RS28740 at 665.053 kb on - strand, within ABID97_RS28740 at 665.379 kb on + strand, within ABID97_RS28740 at 665.686 kb on - strand at 665.887 kb on - strand, within ABID97_RS28745 at 666.199 kb on - strand, within ABID97_RS28745 at 666.199 kb on - strand, within ABID97_RS28745 at 666.315 kb on + strand, within ABID97_RS28745 at 666.417 kb on + strand, within ABID97_RS28745 at 666.417 kb on + strand, within ABID97_RS28745 at 666.417 kb on + strand, within ABID97_RS28745 at 666.417 kb on + strand, within ABID97_RS28745 at 666.463 kb on - strand, within ABID97_RS28745
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 663,716 + ABID97_RS28735 0.17 -0.8 663,716 + ABID97_RS28735 0.17 +0.3 663,716 + ABID97_RS28735 0.17 +0.3 663,716 + ABID97_RS28735 0.17 +0.1 663,947 + ABID97_RS28735 0.45 +0.3 663,948 - ABID97_RS28735 0.45 -1.3 664,026 - ABID97_RS28735 0.55 +0.3 664,026 - ABID97_RS28735 0.55 +0.3 664,211 + ABID97_RS28735 0.78 +0.4 664,614 + ABID97_RS28740 0.12 -0.0 664,758 + ABID97_RS28740 0.25 +1.4 664,759 - ABID97_RS28740 0.25 -0.6 665,053 - ABID97_RS28740 0.51 +1.7 665,379 + ABID97_RS28740 0.80 +0.6 665,686 - -0.0 665,887 - ABID97_RS28745 0.13 +0.1 666,199 - ABID97_RS28745 0.32 -0.5 666,199 - ABID97_RS28745 0.32 -0.7 666,315 + ABID97_RS28745 0.39 -1.0 666,417 + ABID97_RS28745 0.46 -2.0 666,417 + ABID97_RS28745 0.46 +1.2 666,417 + ABID97_RS28745 0.46 -0.3 666,417 + ABID97_RS28745 0.46 +0.3 666,463 - ABID97_RS28745 0.49 -0.5
Or see this region's nucleotide sequence