Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28610

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28600 and ABID97_RS28605 are separated by 16 nucleotidesABID97_RS28605 and ABID97_RS28610 are separated by 12 nucleotidesABID97_RS28610 and ABID97_RS28615 are separated by 54 nucleotidesABID97_RS28615 and ABID97_RS28620 overlap by 110 nucleotides ABID97_RS28600: ABID97_RS28600 - aspartate aminotransferase family protein, at 640,098 to 641,450 _RS28600 ABID97_RS28605: ABID97_RS28605 - Lrp/AsnC family transcriptional regulator, at 641,467 to 641,967 _RS28605 ABID97_RS28610: ABID97_RS28610 - tripartite tricarboxylate transporter substrate-binding protein, at 641,980 to 642,939 _RS28610 ABID97_RS28615: ABID97_RS28615 - CoA transferase, at 642,994 to 643,425 _RS28615 ABID97_RS28620: ABID97_RS28620 - CoA transferase, at 643,316 to 644,203 _RS28620 Position (kb) 641 642 643Strain fitness (log2 ratio) -2 -1 0 1at 641.770 kb on + strand, within ABID97_RS28605at 641.771 kb on - strand, within ABID97_RS28605at 641.828 kb on - strand, within ABID97_RS28605at 642.686 kb on + strand, within ABID97_RS28610at 642.801 kb on - strand, within ABID97_RS28610at 642.939 kb on + strandat 642.943 kb on + strandat 642.954 kb on + strandat 643.521 kb on + strand, within ABID97_RS28620at 643.522 kb on - strand, within ABID97_RS28620at 643.651 kb on - strand, within ABID97_RS28620at 643.809 kb on + strand, within ABID97_RS28620at 643.809 kb on + strand, within ABID97_RS28620

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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641,770 + ABID97_RS28605 0.60 -0.3
641,771 - ABID97_RS28605 0.61 -0.3
641,828 - ABID97_RS28605 0.72 -0.7
642,686 + ABID97_RS28610 0.74 -1.0
642,801 - ABID97_RS28610 0.86 +0.2
642,939 + -0.8
642,943 + +1.5
642,954 + -0.2
643,521 + ABID97_RS28620 0.23 -0.2
643,522 - ABID97_RS28620 0.23 -2.0
643,651 - ABID97_RS28620 0.38 -0.0
643,809 + ABID97_RS28620 0.56 -0.8
643,809 + ABID97_RS28620 0.56 +0.3

Or see this region's nucleotide sequence