Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28595 and ABID97_RS28600 overlap by 4 nucleotides ABID97_RS28600 and ABID97_RS28605 are separated by 16 nucleotides ABID97_RS28605 and ABID97_RS28610 are separated by 12 nucleotides
ABID97_RS28595: ABID97_RS28595 - phosphotransferase, at 639,010 to 640,101
_RS28595
ABID97_RS28600: ABID97_RS28600 - aspartate aminotransferase family protein, at 640,098 to 641,450
_RS28600
ABID97_RS28605: ABID97_RS28605 - Lrp/AsnC family transcriptional regulator, at 641,467 to 641,967
_RS28605
ABID97_RS28610: ABID97_RS28610 - tripartite tricarboxylate transporter substrate-binding protein, at 641,980 to 642,939
_RS28610
Position (kb) 640
641
642 Strain fitness (log2 ratio) -1
0
1 at 639.131 kb on - strand, within ABID97_RS28595 at 639.400 kb on + strand, within ABID97_RS28595 at 639.400 kb on + strand, within ABID97_RS28595 at 639.401 kb on - strand, within ABID97_RS28595 at 639.686 kb on - strand, within ABID97_RS28595 at 640.224 kb on + strand at 640.225 kb on - strand at 640.393 kb on - strand, within ABID97_RS28600 at 641.770 kb on + strand, within ABID97_RS28605 at 641.771 kb on - strand, within ABID97_RS28605 at 641.828 kb on - strand, within ABID97_RS28605
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 639,131 - ABID97_RS28595 0.11 -0.3 639,400 + ABID97_RS28595 0.36 -0.5 639,400 + ABID97_RS28595 0.36 -0.4 639,401 - ABID97_RS28595 0.36 +1.6 639,686 - ABID97_RS28595 0.62 -0.2 640,224 + -0.4 640,225 - -0.8 640,393 - ABID97_RS28600 0.22 +0.7 641,770 + ABID97_RS28605 0.60 -0.3 641,771 - ABID97_RS28605 0.61 -0.3 641,828 - ABID97_RS28605 0.72 -0.7
Or see this region's nucleotide sequence