Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27935

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27925 and ABID97_RS27930 overlap by 4 nucleotidesABID97_RS27930 and ABID97_RS27935 are separated by 3 nucleotidesABID97_RS27935 and ABID97_RS27940 overlap by 4 nucleotidesABID97_RS27940 and ABID97_RS27945 are separated by 92 nucleotides ABID97_RS27925: ABID97_RS27925 - acetaldehyde dehydrogenase (acetylating), at 504,853 to 505,812 _RS27925 ABID97_RS27930: ABID97_RS27930 - hypothetical protein, at 505,809 to 505,949 _RS27930 ABID97_RS27935: ABID97_RS27935 - fumarylacetoacetate hydrolase family protein, at 505,953 to 506,720 _RS27935 ABID97_RS27940: ABID97_RS27940 - 2-keto-4-pentenoate hydratase, at 506,717 to 507,529 _RS27940 ABID97_RS27945: ABID97_RS27945 - heme-binding protein, at 507,622 to 508,146 _RS27945 Position (kb) 505 506 507Strain fitness (log2 ratio) -1 0 1at 505.488 kb on - strand, within ABID97_RS27925at 506.009 kb on - strandat 506.009 kb on - strandat 507.657 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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505,488 - ABID97_RS27925 0.66 -0.6
506,009 - -0.3
506,009 - +0.5
507,657 - +0.4

Or see this region's nucleotide sequence