Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27520 and ABID97_RS27525 are separated by 131 nucleotides ABID97_RS27525 and ABID97_RS27530 overlap by 7 nucleotides ABID97_RS27530 and ABID97_RS27535 are separated by 44 nucleotides ABID97_RS27535 and ABID97_RS27540 are separated by 104 nucleotides ABID97_RS27540 and ABID97_RS27545 are separated by 153 nucleotides
ABID97_RS27520: ABID97_RS27520 - tripartite tricarboxylate transporter substrate binding protein, at 421,847 to 422,830
_RS27520
ABID97_RS27525: ABID97_RS27525 - PadR family transcriptional regulator, at 422,962 to 423,510
_RS27525
ABID97_RS27530: ABID97_RS27530 - hypothetical protein, at 423,504 to 423,674
_RS27530
ABID97_RS27535: ABID97_RS27535 - enoyl-CoA hydratase/isomerase family protein, at 423,719 to 424,522
_RS27535
ABID97_RS27540: ABID97_RS27540 - TetR/AcrR family transcriptional regulator, at 424,627 to 425,259
_RS27540
ABID97_RS27545: ABID97_RS27545 - NADPH-dependent 2,4-dienoyl-CoA reductase, at 425,413 to 427,435
_RS27545
Position (kb) 423
424
425 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 423.189 kb on + strand, within ABID97_RS27525 at 423.406 kb on - strand, within ABID97_RS27525 at 423.406 kb on - strand, within ABID97_RS27525 at 423.406 kb on - strand, within ABID97_RS27525 at 423.625 kb on - strand, within ABID97_RS27530 at 423.721 kb on - strand at 424.419 kb on + strand, within ABID97_RS27535 at 424.419 kb on + strand, within ABID97_RS27535 at 424.420 kb on - strand, within ABID97_RS27535 at 425.257 kb on + strand at 425.376 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 423,189 + ABID97_RS27525 0.41 +0.3 423,406 - ABID97_RS27525 0.81 +0.5 423,406 - ABID97_RS27525 0.81 -2.8 423,406 - ABID97_RS27525 0.81 -0.2 423,625 - ABID97_RS27530 0.71 -0.3 423,721 - -0.2 424,419 + ABID97_RS27535 0.87 +0.9 424,419 + ABID97_RS27535 0.87 -0.4 424,420 - ABID97_RS27535 0.87 -1.5 425,257 + +0.4 425,376 - -0.8
Or see this region's nucleotide sequence