Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27535

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27520 and ABID97_RS27525 are separated by 131 nucleotidesABID97_RS27525 and ABID97_RS27530 overlap by 7 nucleotidesABID97_RS27530 and ABID97_RS27535 are separated by 44 nucleotidesABID97_RS27535 and ABID97_RS27540 are separated by 104 nucleotidesABID97_RS27540 and ABID97_RS27545 are separated by 153 nucleotides ABID97_RS27520: ABID97_RS27520 - tripartite tricarboxylate transporter substrate binding protein, at 421,847 to 422,830 _RS27520 ABID97_RS27525: ABID97_RS27525 - PadR family transcriptional regulator, at 422,962 to 423,510 _RS27525 ABID97_RS27530: ABID97_RS27530 - hypothetical protein, at 423,504 to 423,674 _RS27530 ABID97_RS27535: ABID97_RS27535 - enoyl-CoA hydratase/isomerase family protein, at 423,719 to 424,522 _RS27535 ABID97_RS27540: ABID97_RS27540 - TetR/AcrR family transcriptional regulator, at 424,627 to 425,259 _RS27540 ABID97_RS27545: ABID97_RS27545 - NADPH-dependent 2,4-dienoyl-CoA reductase, at 425,413 to 427,435 _RS27545 Position (kb) 423 424 425Strain fitness (log2 ratio) -3 -2 -1 0 1at 423.189 kb on + strand, within ABID97_RS27525at 423.406 kb on - strand, within ABID97_RS27525at 423.406 kb on - strand, within ABID97_RS27525at 423.406 kb on - strand, within ABID97_RS27525at 423.625 kb on - strand, within ABID97_RS27530at 423.721 kb on - strandat 424.419 kb on + strand, within ABID97_RS27535at 424.419 kb on + strand, within ABID97_RS27535at 424.420 kb on - strand, within ABID97_RS27535at 425.257 kb on + strandat 425.376 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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423,189 + ABID97_RS27525 0.41 +0.3
423,406 - ABID97_RS27525 0.81 +0.5
423,406 - ABID97_RS27525 0.81 -2.8
423,406 - ABID97_RS27525 0.81 -0.2
423,625 - ABID97_RS27530 0.71 -0.3
423,721 - -0.2
424,419 + ABID97_RS27535 0.87 +0.9
424,419 + ABID97_RS27535 0.87 -0.4
424,420 - ABID97_RS27535 0.87 -1.5
425,257 + +0.4
425,376 - -0.8

Or see this region's nucleotide sequence